Hb_000086_530

Information

Type -
Description -
Location Contig86: 437726-438106
Sequence    

Annotation

kegg
ID rcu:RCOM_0542820
description hypothetical protein
nr
ID XP_002526557.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SKN8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0542820 PE=4 SV=1
Gene Ontology
ID GO:0005886
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60765: 437333-438106
cDNA
(Sanger)
(ID:Location)		 001_A07.ab1: 437410-438106 , 004_H05.ab1: 437362-438106 , 006_G06.ab1: 437387-438106 , 025_M20.ab1: 437383-438106 , 025_P05.ab1: 437471-438106 , 027_O18.ab1: 437460-438108 , 035_A22.ab1: 437388-438108

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000086_530 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001856_260 0.0761862315 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
3 Hb_000237_060 0.0892735209 - - hypothetical protein PRUPE_ppa022052mg, partial [Prunus persica]
4 Hb_000327_100 0.0971922912 - - hypothetical protein JCGZ_06658 [Jatropha curcas]
5 Hb_007237_060 0.1026344594 - - -
6 Hb_005144_150 0.1066182656 - - hypothetical protein VITISV_013572 [Vitis vinifera]
7 Hb_001616_010 0.1071775926 - - hypothetical protein RCOM_1749890 [Ricinus communis]
8 Hb_000163_170 0.1136401155 - - -
9 Hb_002020_010 0.1176668409 - - kinase-like protein [Corylus avellana]
10 Hb_001257_140 0.1221200918 - - Gb:AAF02129.1, putative [Theobroma cacao]
11 Hb_001091_040 0.1240383201 - - hypothetical protein JCGZ_01204 [Jatropha curcas]
12 Hb_000352_360 0.1265316203 - - PREDICTED: 4-coumarate--CoA ligase 1-like [Jatropha curcas]
13 Hb_000344_030 0.1285872814 - - phenylalanine ammonia-lyase 1 [Manihot esculenta]
14 Hb_000659_050 0.1323999327 - - PREDICTED: basic blue protein-like [Jatropha curcas]
15 Hb_001675_020 0.1330756033 - - -
16 Hb_002869_090 0.1348395463 - - PREDICTED: dirigent protein 22-like [Jatropha curcas]
17 Hb_011081_010 0.136778232 - - unnamed protein product [Coffea canephora]
18 Hb_003849_170 0.1370372638 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
19 Hb_000139_460 0.1389358369 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
20 Hb_019053_050 0.1392529365 - - ubiquitin-protein ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000086_530 Hb_000086_530 Hb_001856_260 Hb_001856_260 Hb_000086_530--Hb_001856_260 Hb_000237_060 Hb_000237_060 Hb_000086_530--Hb_000237_060 Hb_000327_100 Hb_000327_100 Hb_000086_530--Hb_000327_100 Hb_007237_060 Hb_007237_060 Hb_000086_530--Hb_007237_060 Hb_005144_150 Hb_005144_150 Hb_000086_530--Hb_005144_150 Hb_001616_010 Hb_001616_010 Hb_000086_530--Hb_001616_010 Hb_001856_260--Hb_000237_060 Hb_001856_260--Hb_007237_060 Hb_001856_260--Hb_000327_100 Hb_049438_020 Hb_049438_020 Hb_001856_260--Hb_049438_020 Hb_000163_170 Hb_000163_170 Hb_001856_260--Hb_000163_170 Hb_000237_060--Hb_007237_060 Hb_002020_010 Hb_002020_010 Hb_000237_060--Hb_002020_010 Hb_133926_010 Hb_133926_010 Hb_000237_060--Hb_133926_010 Hb_011081_010 Hb_011081_010 Hb_000237_060--Hb_011081_010 Hb_001675_020 Hb_001675_020 Hb_000327_100--Hb_001675_020 Hb_000659_050 Hb_000659_050 Hb_000327_100--Hb_000659_050 Hb_002869_090 Hb_002869_090 Hb_000327_100--Hb_002869_090 Hb_000352_360 Hb_000352_360 Hb_000327_100--Hb_000352_360 Hb_000477_020 Hb_000477_020 Hb_000327_100--Hb_000477_020 Hb_007237_060--Hb_001675_020 Hb_007237_060--Hb_000327_100 Hb_000685_100 Hb_000685_100 Hb_007237_060--Hb_000685_100 Hb_001257_140 Hb_001257_140 Hb_005144_150--Hb_001257_140 Hb_003858_070 Hb_003858_070 Hb_005144_150--Hb_003858_070 Hb_001006_300 Hb_001006_300 Hb_005144_150--Hb_001006_300 Hb_017061_010 Hb_017061_010 Hb_005144_150--Hb_017061_010 Hb_003849_170 Hb_003849_170 Hb_005144_150--Hb_003849_170 Hb_001898_030 Hb_001898_030 Hb_005144_150--Hb_001898_030 Hb_000071_040 Hb_000071_040 Hb_001616_010--Hb_000071_040 Hb_001616_010--Hb_002020_010 Hb_000220_020 Hb_000220_020 Hb_001616_010--Hb_000220_020 Hb_001616_010--Hb_005144_150 Hb_000139_460 Hb_000139_460 Hb_001616_010--Hb_000139_460
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.426579 17.9383 86.9043 1272.47 1.32554 1.92404
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.438419 0.861007 0.542522 148.071 154.388

CAGE analysis