Hb_000086_570

Information

Type -
Description -
Location Contig86: 505897-510119
Sequence    

Annotation

kegg
ID vvi:100258339
description MATH domain and coiled-coil domain-containing protein At2g05420-like
nr
ID KDP40935.1
description hypothetical protein JCGZ_24934 [Jatropha curcas]
swissprot
ID Q9FPT1
description Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=1 SV=2
trembl
ID A0A067L8V8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24934 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60771: 509081-509294
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000086_570 0.0 - - hypothetical protein JCGZ_24934 [Jatropha curcas]
2 Hb_002078_450 0.0587357179 - - nuclear transport factor, putative [Ricinus communis]
3 Hb_071736_020 0.0588398176 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
4 Hb_021650_030 0.0591683073 - - PREDICTED: uncharacterized protein LOC105642056 [Jatropha curcas]
5 Hb_001427_120 0.0615228424 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
6 Hb_001718_100 0.0617318405 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
7 Hb_002411_200 0.0649284527 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000091_090 0.0653705309 - - hypothetical protein JCGZ_09031 [Jatropha curcas]
9 Hb_000089_160 0.0667693573 - - 60S ribosomal protein L5B [Hevea brasiliensis]
10 Hb_001691_210 0.0740285377 transcription factor TF Family: C2C2-LSD hypothetical protein JCGZ_21436 [Jatropha curcas]
11 Hb_000376_050 0.0793076417 - - polyadenylate-binding protein, putative [Ricinus communis]
12 Hb_007672_010 0.0794983395 - - PREDICTED: uncharacterized protein LOC105639669 isoform X1 [Jatropha curcas]
13 Hb_001881_020 0.0816624548 - - clathrin binding protein, putative [Ricinus communis]
14 Hb_000983_100 0.0816635595 - - PREDICTED: AP-4 complex subunit mu isoform X1 [Vitis vinifera]
15 Hb_000922_270 0.0839808713 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
16 Hb_008289_060 0.084435302 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
17 Hb_084849_020 0.0847606936 - - ARF GTPase activator, putative [Ricinus communis]
18 Hb_014720_080 0.0848680522 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
19 Hb_000671_150 0.0855171826 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
20 Hb_002716_070 0.0875604269 - - PREDICTED: protein ABIL2 [Jatropha curcas]

Gene co-expression network

sample Hb_000086_570 Hb_000086_570 Hb_002078_450 Hb_002078_450 Hb_000086_570--Hb_002078_450 Hb_071736_020 Hb_071736_020 Hb_000086_570--Hb_071736_020 Hb_021650_030 Hb_021650_030 Hb_000086_570--Hb_021650_030 Hb_001427_120 Hb_001427_120 Hb_000086_570--Hb_001427_120 Hb_001718_100 Hb_001718_100 Hb_000086_570--Hb_001718_100 Hb_002411_200 Hb_002411_200 Hb_000086_570--Hb_002411_200 Hb_002078_450--Hb_071736_020 Hb_005686_110 Hb_005686_110 Hb_002078_450--Hb_005686_110 Hb_009711_030 Hb_009711_030 Hb_002078_450--Hb_009711_030 Hb_002078_450--Hb_001718_100 Hb_022250_040 Hb_022250_040 Hb_002078_450--Hb_022250_040 Hb_071736_020--Hb_001718_100 Hb_071736_020--Hb_001427_120 Hb_000975_290 Hb_000975_290 Hb_071736_020--Hb_000975_290 Hb_071736_020--Hb_021650_030 Hb_000091_090 Hb_000091_090 Hb_021650_030--Hb_000091_090 Hb_021650_030--Hb_002411_200 Hb_021650_030--Hb_002078_450 Hb_014720_080 Hb_014720_080 Hb_021650_030--Hb_014720_080 Hb_001881_020 Hb_001881_020 Hb_021650_030--Hb_001881_020 Hb_000956_010 Hb_000956_010 Hb_001427_120--Hb_000956_010 Hb_001427_120--Hb_001718_100 Hb_000376_050 Hb_000376_050 Hb_001427_120--Hb_000376_050 Hb_001427_120--Hb_022250_040 Hb_000089_160 Hb_000089_160 Hb_001718_100--Hb_000089_160 Hb_001691_210 Hb_001691_210 Hb_001718_100--Hb_001691_210 Hb_002411_200--Hb_000091_090 Hb_002411_200--Hb_014720_080 Hb_002411_200--Hb_001881_020 Hb_020178_070 Hb_020178_070 Hb_002411_200--Hb_020178_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.2144 4.19474 1.51024 5.12593 11.045 15.2205
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.5419 21.8022 20.1645 7.33998 1.92916

CAGE analysis