Hb_000086_590

Information

Type -
Description -
Location Contig86: 520489-529904
Sequence    

Annotation

kegg
ID rcu:RCOM_0883870
description ATP-dependent RNA helicase, putative
nr
ID XP_012069167.1
description PREDICTED: putative uncharacterized protein At4g01020, chloroplastic [Jatropha curcas]
swissprot
ID P0CE10
description Putative uncharacterized protein At4g01020, chloroplastic OS=Arabidopsis thaliana GN=At4g01020 PE=3 SV=1
trembl
ID A0A067KXQ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24931 PE=4 SV=1
Gene Ontology
ID GO:0003676
description atp-dependent rna

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60773: 520552-527058 , PASA_asmbl_60774: 527088-529595
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000086_590 0.0 - - PREDICTED: putative uncharacterized protein At4g01020, chloroplastic [Jatropha curcas]
2 Hb_010710_010 0.0900199266 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
3 Hb_006091_030 0.0920859284 desease resistance Gene Name: AAA PREDICTED: cell division control protein 48 homolog C-like isoform X1 [Jatropha curcas]
4 Hb_000413_180 0.0946313319 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
5 Hb_123777_030 0.0988991892 transcription factor TF Family: SNF2 PREDICTED: DNA helicase INO80 isoform X2 [Jatropha curcas]
6 Hb_000723_260 0.0998348303 - - ethylene insensitive protein, putative [Ricinus communis]
7 Hb_000497_140 0.1000100449 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
8 Hb_005399_010 0.1013488969 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
9 Hb_000005_380 0.1016869955 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
10 Hb_000230_080 0.1023776433 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
11 Hb_189118_010 0.1033047296 - - PREDICTED: extended synaptotagmin-1 [Cucumis melo]
12 Hb_000390_070 0.1036259533 - - PREDICTED: uncharacterized protein LOC105632478 isoform X1 [Jatropha curcas]
13 Hb_000206_150 0.1047700401 - - unnamed protein product [Coffea canephora]
14 Hb_000358_080 0.1076909549 - - Ribonuclease 3 [Gossypium arboreum]
15 Hb_007943_080 0.1098291748 - - PREDICTED: cyclin-dependent kinase F-1 isoform X1 [Jatropha curcas]
16 Hb_000106_040 0.1105993762 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Vitis vinifera]
17 Hb_004055_040 0.1108994048 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
18 Hb_005730_030 0.112886629 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
19 Hb_007586_030 0.1129525651 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
20 Hb_000016_110 0.1129599949 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38010 [Jatropha curcas]

Gene co-expression network

sample Hb_000086_590 Hb_000086_590 Hb_010710_010 Hb_010710_010 Hb_000086_590--Hb_010710_010 Hb_006091_030 Hb_006091_030 Hb_000086_590--Hb_006091_030 Hb_000413_180 Hb_000413_180 Hb_000086_590--Hb_000413_180 Hb_123777_030 Hb_123777_030 Hb_000086_590--Hb_123777_030 Hb_000723_260 Hb_000723_260 Hb_000086_590--Hb_000723_260 Hb_000497_140 Hb_000497_140 Hb_000086_590--Hb_000497_140 Hb_000230_080 Hb_000230_080 Hb_010710_010--Hb_000230_080 Hb_010710_010--Hb_000413_180 Hb_003750_080 Hb_003750_080 Hb_010710_010--Hb_003750_080 Hb_002307_100 Hb_002307_100 Hb_010710_010--Hb_002307_100 Hb_000152_820 Hb_000152_820 Hb_010710_010--Hb_000152_820 Hb_001720_050 Hb_001720_050 Hb_010710_010--Hb_001720_050 Hb_000490_030 Hb_000490_030 Hb_006091_030--Hb_000490_030 Hb_000358_080 Hb_000358_080 Hb_006091_030--Hb_000358_080 Hb_002874_070 Hb_002874_070 Hb_006091_030--Hb_002874_070 Hb_000016_110 Hb_000016_110 Hb_006091_030--Hb_000016_110 Hb_000413_130 Hb_000413_130 Hb_006091_030--Hb_000413_130 Hb_000078_130 Hb_000078_130 Hb_006091_030--Hb_000078_130 Hb_000413_180--Hb_000230_080 Hb_010175_020 Hb_010175_020 Hb_000413_180--Hb_010175_020 Hb_000413_180--Hb_003750_080 Hb_000413_180--Hb_000152_820 Hb_000386_030 Hb_000386_030 Hb_000413_180--Hb_000386_030 Hb_003406_040 Hb_003406_040 Hb_123777_030--Hb_003406_040 Hb_001871_040 Hb_001871_040 Hb_123777_030--Hb_001871_040 Hb_000005_380 Hb_000005_380 Hb_123777_030--Hb_000005_380 Hb_007586_030 Hb_007586_030 Hb_123777_030--Hb_007586_030 Hb_000977_180 Hb_000977_180 Hb_123777_030--Hb_000977_180 Hb_004055_040 Hb_004055_040 Hb_123777_030--Hb_004055_040 Hb_000723_260--Hb_000152_820 Hb_000538_200 Hb_000538_200 Hb_000723_260--Hb_000538_200 Hb_002150_030 Hb_002150_030 Hb_000723_260--Hb_002150_030 Hb_000317_020 Hb_000317_020 Hb_000723_260--Hb_000317_020 Hb_000723_260--Hb_007586_030 Hb_007757_110 Hb_007757_110 Hb_000723_260--Hb_007757_110 Hb_000497_140--Hb_000016_110 Hb_005399_010 Hb_005399_010 Hb_000497_140--Hb_005399_010 Hb_000497_140--Hb_006091_030 Hb_000106_040 Hb_000106_040 Hb_000497_140--Hb_000106_040 Hb_000077_130 Hb_000077_130 Hb_000497_140--Hb_000077_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.3941 21.8833 3.51049 7.87197 57.0962 50.7772
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.3585 13.1195 55.3158 17.4598 13.7395

CAGE analysis