Hb_000086_690

Information

Type -
Description -
Location Contig86: 601219-605013
Sequence    

Annotation

kegg
ID pxb:103927772
description splicing factor 3B subunit 1-like
nr
ID XP_012069159.1
description PREDICTED: splicing factor 3B subunit 1 [Jatropha curcas]
swissprot
ID O57683
description Splicing factor 3B subunit 1 OS=Xenopus laevis GN=sf3b1 PE=2 SV=1
trembl
ID A0A067KXJ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24925 PE=4 SV=1
Gene Ontology
ID GO:0009507
description splicing factor 3b subunit 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60785: 601014-605265 , PASA_asmbl_60786: 605016-605263
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000086_690 0.0 - - PREDICTED: splicing factor 3B subunit 1 [Jatropha curcas]
2 Hb_009486_170 0.0569590964 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
3 Hb_001133_030 0.0659930112 - - PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
4 Hb_000183_050 0.0713080373 - - PREDICTED: alpha-mannosidase 2 [Jatropha curcas]
5 Hb_003119_080 0.0717220669 - - PREDICTED: splicing factor 3B subunit 1 [Jatropha curcas]
6 Hb_001401_060 0.0727442652 - - PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Jatropha curcas]
7 Hb_011202_020 0.0737011522 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1 [Jatropha curcas]
8 Hb_000406_020 0.0738999333 - - -
9 Hb_000665_230 0.0739920815 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
10 Hb_003805_040 0.0754773647 - - Sacsin [Glycine soja]
11 Hb_002333_050 0.0767993952 - - PREDICTED: uncharacterized protein LOC105644854 isoform X1 [Jatropha curcas]
12 Hb_011689_030 0.0771495184 - - 80 kD MCM3-associated protein, putative [Ricinus communis]
13 Hb_000925_090 0.0783187922 - - PREDICTED: uncharacterized protein LOC105635805 isoform X1 [Jatropha curcas]
14 Hb_001235_230 0.0787089367 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
15 Hb_000176_130 0.0787560777 - - PREDICTED: probable splicing factor 3A subunit 1 [Jatropha curcas]
16 Hb_015978_100 0.0827520468 - - PREDICTED: DNA mismatch repair protein MSH6 [Jatropha curcas]
17 Hb_188063_010 0.0830738715 - - hypothetical protein RCOM_1469330 [Ricinus communis]
18 Hb_003124_160 0.0834130816 - - dynamin, putative [Ricinus communis]
19 Hb_003211_040 0.0841512101 - - PREDICTED: uncharacterized protein LOC105634664 isoform X1 [Jatropha curcas]
20 Hb_002909_120 0.0843739774 - - PREDICTED: transcription elongation factor SPT6 [Jatropha curcas]

Gene co-expression network

sample Hb_000086_690 Hb_000086_690 Hb_009486_170 Hb_009486_170 Hb_000086_690--Hb_009486_170 Hb_001133_030 Hb_001133_030 Hb_000086_690--Hb_001133_030 Hb_000183_050 Hb_000183_050 Hb_000086_690--Hb_000183_050 Hb_003119_080 Hb_003119_080 Hb_000086_690--Hb_003119_080 Hb_001401_060 Hb_001401_060 Hb_000086_690--Hb_001401_060 Hb_011202_020 Hb_011202_020 Hb_000086_690--Hb_011202_020 Hb_009486_170--Hb_001133_030 Hb_002333_050 Hb_002333_050 Hb_009486_170--Hb_002333_050 Hb_003805_040 Hb_003805_040 Hb_009486_170--Hb_003805_040 Hb_000665_230 Hb_000665_230 Hb_009486_170--Hb_000665_230 Hb_007576_210 Hb_007576_210 Hb_009486_170--Hb_007576_210 Hb_000925_090 Hb_000925_090 Hb_001133_030--Hb_000925_090 Hb_012244_020 Hb_012244_020 Hb_001133_030--Hb_012244_020 Hb_011689_030 Hb_011689_030 Hb_001133_030--Hb_011689_030 Hb_000003_410 Hb_000003_410 Hb_001133_030--Hb_000003_410 Hb_002521_020 Hb_002521_020 Hb_001133_030--Hb_002521_020 Hb_015978_100 Hb_015978_100 Hb_000183_050--Hb_015978_100 Hb_000183_050--Hb_011202_020 Hb_003417_010 Hb_003417_010 Hb_000183_050--Hb_003417_010 Hb_001235_230 Hb_001235_230 Hb_000183_050--Hb_001235_230 Hb_000035_410 Hb_000035_410 Hb_000183_050--Hb_000035_410 Hb_002909_120 Hb_002909_120 Hb_003119_080--Hb_002909_120 Hb_011609_150 Hb_011609_150 Hb_003119_080--Hb_011609_150 Hb_000406_020 Hb_000406_020 Hb_003119_080--Hb_000406_020 Hb_003211_040 Hb_003211_040 Hb_003119_080--Hb_003211_040 Hb_000046_190 Hb_000046_190 Hb_003119_080--Hb_000046_190 Hb_000176_130 Hb_000176_130 Hb_001401_060--Hb_000176_130 Hb_001401_060--Hb_001235_230 Hb_002044_170 Hb_002044_170 Hb_001401_060--Hb_002044_170 Hb_001440_040 Hb_001440_040 Hb_001401_060--Hb_001440_040 Hb_001401_060--Hb_000406_020 Hb_011202_020--Hb_001235_230 Hb_005402_040 Hb_005402_040 Hb_011202_020--Hb_005402_040 Hb_003124_160 Hb_003124_160 Hb_011202_020--Hb_003124_160 Hb_005357_260 Hb_005357_260 Hb_011202_020--Hb_005357_260 Hb_000261_030 Hb_000261_030 Hb_011202_020--Hb_000261_030 Hb_011202_020--Hb_009486_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.9691 22.7249 9.15447 12.9487 15.8021 18.1113
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.97116 3.69341 8.88364 18.178 24.1502

CAGE analysis