Hb_000087_030

Information

Type -
Description -
Location Contig87: 53536-76859
Sequence    

Annotation

kegg
ID pvu:PHAVU_001G155200g
description hypothetical protein
nr
ID KDP40245.1
description hypothetical protein JCGZ_02243 [Jatropha curcas]
swissprot
ID Q9HDW7
description Calcium-transporting ATPase 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pmc1 PE=3 SV=1
trembl
ID A0A067L6Z0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02243 PE=3 SV=1
Gene Ontology
ID GO:0016021
description calcium-transporting atpase plasma membrane-type-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000087_030 0.0 - - hypothetical protein JCGZ_02243 [Jatropha curcas]
2 Hb_000051_170 0.1514441346 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
3 Hb_033363_070 0.1566993737 - - PREDICTED: LOW QUALITY PROTEIN: methionine aminopeptidase 1B, chloroplastic, partial [Populus euphratica]
4 Hb_005714_130 0.1596503357 transcription factor TF Family: C2H2 unknown [Populus trichocarpa x Populus deltoides]
5 Hb_165279_010 0.1691875765 - - Kiwellin, putative [Ricinus communis]
6 Hb_000130_190 0.1714641025 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]
7 Hb_011671_090 0.1775933447 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
8 Hb_005527_020 0.1779152676 - - PREDICTED: uncharacterized protein LOC105643027 [Jatropha curcas]
9 Hb_000198_070 0.1782624485 - - PREDICTED: cyclin-dependent kinase inhibitor 7-like [Jatropha curcas]
10 Hb_000486_060 0.183185719 - - PREDICTED: immediate early response 3-interacting protein 1-like isoform X2 [Glycine max]
11 Hb_000785_080 0.1859608105 - - PREDICTED: zinc finger CCCH domain-containing protein 13 [Jatropha curcas]
12 Hb_001014_110 0.1869345372 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
13 Hb_150023_010 0.189936257 - - 50S ribosomal protein L2, putative [Ricinus communis]
14 Hb_002737_070 0.1900584505 - - PREDICTED: phagocyte signaling-impaired protein [Jatropha curcas]
15 Hb_000009_650 0.1902009227 - - PREDICTED: ribosomal RNA small subunit methyltransferase nep-1 [Jatropha curcas]
16 Hb_001546_050 0.1912821414 - - -
17 Hb_013691_020 0.1916349697 - - transcription initiation factor iie, alpha subunit, putative [Ricinus communis]
18 Hb_000016_030 0.1924107215 - - PREDICTED: hippocampus abundant transcript-like protein 1 isoform X1 [Jatropha curcas]
19 Hb_001005_150 0.1924648156 - - -
20 Hb_149225_010 0.1925064086 - - DNA-directed RNA polymerase II subunit rpb4, putative isoform 4, partial [Theobroma cacao]

Gene co-expression network

sample Hb_000087_030 Hb_000087_030 Hb_000051_170 Hb_000051_170 Hb_000087_030--Hb_000051_170 Hb_033363_070 Hb_033363_070 Hb_000087_030--Hb_033363_070 Hb_005714_130 Hb_005714_130 Hb_000087_030--Hb_005714_130 Hb_165279_010 Hb_165279_010 Hb_000087_030--Hb_165279_010 Hb_000130_190 Hb_000130_190 Hb_000087_030--Hb_000130_190 Hb_011671_090 Hb_011671_090 Hb_000087_030--Hb_011671_090 Hb_000051_170--Hb_011671_090 Hb_000991_070 Hb_000991_070 Hb_000051_170--Hb_000991_070 Hb_156825_010 Hb_156825_010 Hb_000051_170--Hb_156825_010 Hb_001380_020 Hb_001380_020 Hb_000051_170--Hb_001380_020 Hb_001546_050 Hb_001546_050 Hb_000051_170--Hb_001546_050 Hb_012052_010 Hb_012052_010 Hb_033363_070--Hb_012052_010 Hb_033363_070--Hb_005714_130 Hb_033363_070--Hb_000051_170 Hb_000656_100 Hb_000656_100 Hb_033363_070--Hb_000656_100 Hb_004060_030 Hb_004060_030 Hb_033363_070--Hb_004060_030 Hb_010565_010 Hb_010565_010 Hb_005714_130--Hb_010565_010 Hb_002007_180 Hb_002007_180 Hb_005714_130--Hb_002007_180 Hb_001767_120 Hb_001767_120 Hb_005714_130--Hb_001767_120 Hb_041392_010 Hb_041392_010 Hb_005714_130--Hb_041392_010 Hb_005367_010 Hb_005367_010 Hb_005714_130--Hb_005367_010 Hb_128998_010 Hb_128998_010 Hb_005714_130--Hb_128998_010 Hb_002541_020 Hb_002541_020 Hb_165279_010--Hb_002541_020 Hb_074449_010 Hb_074449_010 Hb_165279_010--Hb_074449_010 Hb_003688_090 Hb_003688_090 Hb_165279_010--Hb_003688_090 Hb_004117_160 Hb_004117_160 Hb_165279_010--Hb_004117_160 Hb_001014_110 Hb_001014_110 Hb_165279_010--Hb_001014_110 Hb_009119_030 Hb_009119_030 Hb_000130_190--Hb_009119_030 Hb_028707_080 Hb_028707_080 Hb_000130_190--Hb_028707_080 Hb_004935_080 Hb_004935_080 Hb_000130_190--Hb_004935_080 Hb_002320_070 Hb_002320_070 Hb_000130_190--Hb_002320_070 Hb_008029_020 Hb_008029_020 Hb_000130_190--Hb_008029_020 Hb_019053_020 Hb_019053_020 Hb_000130_190--Hb_019053_020 Hb_030131_040 Hb_030131_040 Hb_011671_090--Hb_030131_040 Hb_000526_050 Hb_000526_050 Hb_011671_090--Hb_000526_050 Hb_001341_120 Hb_001341_120 Hb_011671_090--Hb_001341_120 Hb_000009_650 Hb_000009_650 Hb_011671_090--Hb_000009_650 Hb_011671_090--Hb_156825_010 Hb_000025_050 Hb_000025_050 Hb_011671_090--Hb_000025_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.176511 0.0776271 0.115328 0.279675 0.217889 0.510607
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0997655 0.168232 0 0.133438 0.143619

CAGE analysis