Hb_000087_050

Information

Type -
Description -
Location Contig87: 122963-148077
Sequence    

Annotation

kegg
ID rcu:RCOM_1707830
description cation-transporting atpase plant, putative (EC:3.6.3.8)
nr
ID KDP30671.1
description hypothetical protein JCGZ_16227 [Jatropha curcas]
swissprot
ID Q9SZR1
description Calcium-transporting ATPase 10, plasma membrane-type OS=Arabidopsis thaliana GN=ACA10 PE=1 SV=2
trembl
ID A0A067K372
description Calcium-transporting ATPase OS=Jatropha curcas GN=JCGZ_16227 PE=3 SV=1
Gene Ontology
ID GO:0016021
description calcium-transporting atpase plasma membrane-type-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61128: 124013-126526 , PASA_asmbl_61129: 126975-127285 , PASA_asmbl_61130: 130437-131277 , PASA_asmbl_61131: 131300-131496 , PASA_asmbl_61132: 131674-137557 , PASA_asmbl_61133: 141455-146728
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000087_050 0.0 - - hypothetical protein JCGZ_16227 [Jatropha curcas]
2 Hb_000748_080 0.1447527424 - - hypothetical protein OsI_28173 [Oryza sativa Indica Group]
3 Hb_006111_080 0.1479780243 - - hypothetical protein JCGZ_18070 [Jatropha curcas]
4 Hb_145979_010 0.1504301988 - - PREDICTED: uncharacterized protein LOC105172316 [Sesamum indicum]
5 Hb_111198_020 0.1546097527 - - hypothetical protein JCGZ_06907 [Jatropha curcas]
6 Hb_023732_090 0.1556140205 - - WD-repeat protein, putative [Ricinus communis]
7 Hb_003494_200 0.1576469444 - - PREDICTED: beta-1,3-galactosyltransferase 15-like [Jatropha curcas]
8 Hb_002170_040 0.1588286887 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000923_050 0.1606151917 - - PREDICTED: transcription factor bHLH113 isoform X1 [Jatropha curcas]
10 Hb_002400_400 0.1608739597 - - PREDICTED: topless-related protein 1-like isoform X3 [Jatropha curcas]
11 Hb_000441_150 0.1615729267 - - PREDICTED: ferredoxin--NADP reductase, root-type isozyme, chloroplastic isoform X2 [Jatropha curcas]
12 Hb_000025_340 0.1623192524 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62350 [Jatropha curcas]
13 Hb_010727_010 0.1628670941 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
14 Hb_006588_150 0.1681398443 - - PREDICTED: steroid 5-alpha-reductase DET2 [Jatropha curcas]
15 Hb_089497_010 0.1698322916 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like isoform X3 [Jatropha curcas]
16 Hb_112023_010 0.1702205715 - - hypothetical protein EUGRSUZ_C03826 [Eucalyptus grandis]
17 Hb_004230_040 0.1710226893 - - conserved hypothetical protein [Ricinus communis]
18 Hb_038172_010 0.1731295335 desease resistance Gene Name: AAA PREDICTED: cell division control protein 48 homolog B [Jatropha curcas]
19 Hb_000175_100 0.1736263535 - - protein kinase, putative [Ricinus communis]
20 Hb_004586_280 0.1737021125 - - PREDICTED: GEM-like protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000087_050 Hb_000087_050 Hb_000748_080 Hb_000748_080 Hb_000087_050--Hb_000748_080 Hb_006111_080 Hb_006111_080 Hb_000087_050--Hb_006111_080 Hb_145979_010 Hb_145979_010 Hb_000087_050--Hb_145979_010 Hb_111198_020 Hb_111198_020 Hb_000087_050--Hb_111198_020 Hb_023732_090 Hb_023732_090 Hb_000087_050--Hb_023732_090 Hb_003494_200 Hb_003494_200 Hb_000087_050--Hb_003494_200 Hb_006157_020 Hb_006157_020 Hb_000748_080--Hb_006157_020 Hb_007017_090 Hb_007017_090 Hb_000748_080--Hb_007017_090 Hb_000086_380 Hb_000086_380 Hb_000748_080--Hb_000086_380 Hb_012490_030 Hb_012490_030 Hb_000748_080--Hb_012490_030 Hb_001579_320 Hb_001579_320 Hb_000748_080--Hb_001579_320 Hb_000748_080--Hb_111198_020 Hb_000441_150 Hb_000441_150 Hb_006111_080--Hb_000441_150 Hb_000329_650 Hb_000329_650 Hb_006111_080--Hb_000329_650 Hb_015175_050 Hb_015175_050 Hb_006111_080--Hb_015175_050 Hb_008864_090 Hb_008864_090 Hb_006111_080--Hb_008864_090 Hb_006788_020 Hb_006788_020 Hb_006111_080--Hb_006788_020 Hb_119494_010 Hb_119494_010 Hb_006111_080--Hb_119494_010 Hb_000016_100 Hb_000016_100 Hb_145979_010--Hb_000016_100 Hb_010727_010 Hb_010727_010 Hb_145979_010--Hb_010727_010 Hb_000923_050 Hb_000923_050 Hb_145979_010--Hb_000923_050 Hb_001477_130 Hb_001477_130 Hb_145979_010--Hb_001477_130 Hb_001016_110 Hb_001016_110 Hb_145979_010--Hb_001016_110 Hb_004108_140 Hb_004108_140 Hb_111198_020--Hb_004108_140 Hb_011512_090 Hb_011512_090 Hb_111198_020--Hb_011512_090 Hb_089497_010 Hb_089497_010 Hb_111198_020--Hb_089497_010 Hb_002400_400 Hb_002400_400 Hb_111198_020--Hb_002400_400 Hb_001089_020 Hb_001089_020 Hb_111198_020--Hb_001089_020 Hb_005016_050 Hb_005016_050 Hb_023732_090--Hb_005016_050 Hb_023732_090--Hb_000748_080 Hb_005389_150 Hb_005389_150 Hb_023732_090--Hb_005389_150 Hb_010423_040 Hb_010423_040 Hb_023732_090--Hb_010423_040 Hb_012799_130 Hb_012799_130 Hb_023732_090--Hb_012799_130 Hb_023732_090--Hb_012490_030 Hb_000130_410 Hb_000130_410 Hb_003494_200--Hb_000130_410 Hb_000907_110 Hb_000907_110 Hb_003494_200--Hb_000907_110 Hb_000220_220 Hb_000220_220 Hb_003494_200--Hb_000220_220 Hb_000680_160 Hb_000680_160 Hb_003494_200--Hb_000680_160 Hb_003294_070 Hb_003294_070 Hb_003494_200--Hb_003294_070 Hb_000015_040 Hb_000015_040 Hb_003494_200--Hb_000015_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.9375 3.54635 0.806568 1.30491 1.75975 4.17064
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.92123 3.98031 0.5494 4.75525 0.861996

CAGE analysis