Hb_000087_070

Information

Type -
Description -
Location Contig87: 178034-181881
Sequence    

Annotation

kegg
ID rcu:RCOM_1325460
description catalytic, putative
nr
ID XP_012090902.1
description PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
swissprot
ID Q6DBG8
description Probable arabinosyltransferase ARAD1 OS=Arabidopsis thaliana GN=ARAD1 PE=1 SV=1
trembl
ID A0A067JQH1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00551 PE=4 SV=1
Gene Ontology
ID GO:0005794
description probable arabinosyltransferase arad1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61134: 172858-177367 , PASA_asmbl_61136: 178215-181865 , PASA_asmbl_61137: 177615-180398 , PASA_asmbl_61138: 178215-181261 , PASA_asmbl_61139: 178290-179429
cDNA
(Sanger)
(ID:Location)		 006_G21.ab1: 178332-180381 , 043_O07.ab1: 177615-180398

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000087_070 0.0 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
2 Hb_000179_270 0.0431035835 - - hypothetical protein JCGZ_07444 [Jatropha curcas]
3 Hb_002272_270 0.0763260433 - - hypothetical protein POPTR_0013s02780g [Populus trichocarpa]
4 Hb_004607_090 0.077408192 - - PREDICTED: uncharacterized protein LOC105648257 [Jatropha curcas]
5 Hb_001269_190 0.079798755 - - PREDICTED: Golgi SNAP receptor complex member 1-1 [Jatropha curcas]
6 Hb_000840_200 0.0799089888 - - PREDICTED: carbamoyl-phosphate synthase small chain, chloroplastic-like [Jatropha curcas]
7 Hb_003878_150 0.0802462482 - - PREDICTED: GPI mannosyltransferase 3 [Jatropha curcas]
8 Hb_000046_170 0.0809057991 - - PREDICTED: uncharacterized protein LOC105631841 isoform X1 [Jatropha curcas]
9 Hb_001189_070 0.083176443 - - PREDICTED: ribosome production factor 1 [Jatropha curcas]
10 Hb_002820_020 0.0837306925 - - hypothetical protein VITISV_005587 [Vitis vinifera]
11 Hb_002042_150 0.0860051937 - - PREDICTED: signal peptidase complex subunit 3B [Jatropha curcas]
12 Hb_007472_070 0.0877426385 - - cir, putative [Ricinus communis]
13 Hb_002995_050 0.0885549924 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X2 [Jatropha curcas]
14 Hb_000310_090 0.0899154008 - - 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Jatropha curcas]
15 Hb_185255_010 0.0899640156 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
16 Hb_109000_020 0.090446431 - - PREDICTED: uncharacterized protein LOC105633730 [Jatropha curcas]
17 Hb_005800_030 0.0927150416 - - PREDICTED: lysM and putative peptidoglycan-binding domain-containing protein 4-like [Jatropha curcas]
18 Hb_001232_190 0.093030673 - - PREDICTED: uncharacterized protein LOC105639761 isoform X2 [Jatropha curcas]
19 Hb_000384_070 0.0933961169 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004705_170 0.0934154411 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]

Gene co-expression network

sample Hb_000087_070 Hb_000087_070 Hb_000179_270 Hb_000179_270 Hb_000087_070--Hb_000179_270 Hb_002272_270 Hb_002272_270 Hb_000087_070--Hb_002272_270 Hb_004607_090 Hb_004607_090 Hb_000087_070--Hb_004607_090 Hb_001269_190 Hb_001269_190 Hb_000087_070--Hb_001269_190 Hb_000840_200 Hb_000840_200 Hb_000087_070--Hb_000840_200 Hb_003878_150 Hb_003878_150 Hb_000087_070--Hb_003878_150 Hb_000179_270--Hb_002272_270 Hb_002820_020 Hb_002820_020 Hb_000179_270--Hb_002820_020 Hb_001189_070 Hb_001189_070 Hb_000179_270--Hb_001189_070 Hb_002042_150 Hb_002042_150 Hb_000179_270--Hb_002042_150 Hb_000179_270--Hb_001269_190 Hb_002272_270--Hb_000840_200 Hb_015675_040 Hb_015675_040 Hb_002272_270--Hb_015675_040 Hb_005288_130 Hb_005288_130 Hb_002272_270--Hb_005288_130 Hb_157023_020 Hb_157023_020 Hb_002272_270--Hb_157023_020 Hb_000983_050 Hb_000983_050 Hb_004607_090--Hb_000983_050 Hb_007472_070 Hb_007472_070 Hb_004607_090--Hb_007472_070 Hb_000603_160 Hb_000603_160 Hb_004607_090--Hb_000603_160 Hb_000300_270 Hb_000300_270 Hb_004607_090--Hb_000300_270 Hb_005162_090 Hb_005162_090 Hb_004607_090--Hb_005162_090 Hb_185255_010 Hb_185255_010 Hb_001269_190--Hb_185255_010 Hb_002995_050 Hb_002995_050 Hb_001269_190--Hb_002995_050 Hb_001489_110 Hb_001489_110 Hb_001269_190--Hb_001489_110 Hb_006683_070 Hb_006683_070 Hb_001269_190--Hb_006683_070 Hb_002303_020 Hb_002303_020 Hb_000840_200--Hb_002303_020 Hb_003878_090 Hb_003878_090 Hb_000840_200--Hb_003878_090 Hb_000840_200--Hb_157023_020 Hb_000069_720 Hb_000069_720 Hb_000840_200--Hb_000069_720 Hb_000840_200--Hb_015675_040 Hb_109000_020 Hb_109000_020 Hb_003878_150--Hb_109000_020 Hb_005725_130 Hb_005725_130 Hb_003878_150--Hb_005725_130 Hb_001662_100 Hb_001662_100 Hb_003878_150--Hb_001662_100 Hb_000256_150 Hb_000256_150 Hb_003878_150--Hb_000256_150 Hb_003883_060 Hb_003883_060 Hb_003878_150--Hb_003883_060 Hb_001195_400 Hb_001195_400 Hb_003878_150--Hb_001195_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.4664 5.71403 7.0194 15.227 4.63386 7.1811
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.92099 11.2977 4.47814 8.69477 9.97527

CAGE analysis