Hb_000087_100

Information

Type -
Description -
Location Contig87: 190004-195474
Sequence    

Annotation

kegg
ID rcu:RCOM_1325350
description Cellulose synthase A catalytic subunit 3 [UDP-forming], putative (EC:2.4.1.12)
nr
ID XP_012090903.1
description PREDICTED: cellulose synthase-like protein D3 [Jatropha curcas]
swissprot
ID Q9M9M4
description Cellulose synthase-like protein D3 OS=Arabidopsis thaliana GN=CSLD3 PE=1 SV=1
trembl
ID A0A067JP46
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00552 PE=4 SV=1
Gene Ontology
ID GO:0016021
description cellulose synthase-like protein d3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61140: 189695-195482
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000087_100 0.0 - - PREDICTED: cellulose synthase-like protein D3 [Jatropha curcas]
2 Hb_001318_140 0.1024653466 - - PREDICTED: probable protein phosphatase 2C 49 [Jatropha curcas]
3 Hb_001226_170 0.1111839449 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
4 Hb_002849_110 0.1140533892 - - hypothetical protein JCGZ_14362 [Jatropha curcas]
5 Hb_007382_100 0.11460445 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
6 Hb_000836_210 0.1166239299 - - hypothetical protein JCGZ_14362 [Jatropha curcas]
7 Hb_012787_040 0.1280929826 - - PREDICTED: uncharacterized protein LOC105649794 isoform X2 [Jatropha curcas]
8 Hb_000172_080 0.1326655432 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Jatropha curcas]
9 Hb_178658_010 0.1335021461 - - PREDICTED: uncharacterized protein LOC105641396 [Jatropha curcas]
10 Hb_009476_110 0.1369449095 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
11 Hb_000836_600 0.1372044043 - - PREDICTED: delta(8)-fatty-acid desaturase 2 [Jatropha curcas]
12 Hb_001619_160 0.1417520307 transcription factor TF Family: ERF DREB1p [Hevea brasiliensis]
13 Hb_000069_330 0.1423000597 - - protein with unknown function [Ricinus communis]
14 Hb_000776_050 0.1433562424 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
15 Hb_000805_040 0.1447608019 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
16 Hb_000009_200 0.1469609643 - - PREDICTED: UPF0496 protein At2g18630 [Jatropha curcas]
17 Hb_098160_010 0.1472713941 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
18 Hb_001329_080 0.1489672909 - - PREDICTED: probable protein phosphatase 2C 49 [Jatropha curcas]
19 Hb_000373_250 0.1514207256 - - PREDICTED: uncharacterized protein LOC105640939 [Jatropha curcas]
20 Hb_001102_200 0.1514795794 - - PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Jatropha curcas]

Gene co-expression network

sample Hb_000087_100 Hb_000087_100 Hb_001318_140 Hb_001318_140 Hb_000087_100--Hb_001318_140 Hb_001226_170 Hb_001226_170 Hb_000087_100--Hb_001226_170 Hb_002849_110 Hb_002849_110 Hb_000087_100--Hb_002849_110 Hb_007382_100 Hb_007382_100 Hb_000087_100--Hb_007382_100 Hb_000836_210 Hb_000836_210 Hb_000087_100--Hb_000836_210 Hb_012787_040 Hb_012787_040 Hb_000087_100--Hb_012787_040 Hb_001318_140--Hb_007382_100 Hb_006052_060 Hb_006052_060 Hb_001318_140--Hb_006052_060 Hb_001619_160 Hb_001619_160 Hb_001318_140--Hb_001619_160 Hb_065525_010 Hb_065525_010 Hb_001318_140--Hb_065525_010 Hb_149484_010 Hb_149484_010 Hb_001318_140--Hb_149484_010 Hb_003633_150 Hb_003633_150 Hb_001226_170--Hb_003633_150 Hb_009476_110 Hb_009476_110 Hb_001226_170--Hb_009476_110 Hb_001102_200 Hb_001102_200 Hb_001226_170--Hb_001102_200 Hb_001226_170--Hb_007382_100 Hb_182970_010 Hb_182970_010 Hb_001226_170--Hb_182970_010 Hb_002849_110--Hb_000836_210 Hb_001405_060 Hb_001405_060 Hb_002849_110--Hb_001405_060 Hb_005282_010 Hb_005282_010 Hb_002849_110--Hb_005282_010 Hb_000373_250 Hb_000373_250 Hb_002849_110--Hb_000373_250 Hb_004282_040 Hb_004282_040 Hb_002849_110--Hb_004282_040 Hb_001329_080 Hb_001329_080 Hb_007382_100--Hb_001329_080 Hb_007382_100--Hb_001619_160 Hb_001898_130 Hb_001898_130 Hb_007382_100--Hb_001898_130 Hb_003430_070 Hb_003430_070 Hb_007382_100--Hb_003430_070 Hb_001472_140 Hb_001472_140 Hb_000836_210--Hb_001472_140 Hb_178658_010 Hb_178658_010 Hb_000836_210--Hb_178658_010 Hb_001541_160 Hb_001541_160 Hb_000836_210--Hb_001541_160 Hb_002311_110 Hb_002311_110 Hb_000836_210--Hb_002311_110 Hb_003752_120 Hb_003752_120 Hb_012787_040--Hb_003752_120 Hb_000803_060 Hb_000803_060 Hb_012787_040--Hb_000803_060 Hb_001662_170 Hb_001662_170 Hb_012787_040--Hb_001662_170 Hb_011360_090 Hb_011360_090 Hb_012787_040--Hb_011360_090 Hb_158696_010 Hb_158696_010 Hb_012787_040--Hb_158696_010 Hb_004106_010 Hb_004106_010 Hb_012787_040--Hb_004106_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.52525 83.0168 26.7704 41.0354 2.30374 2.21857
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.71749 2.56487 7.5296 10.3125 20.834

CAGE analysis