Hb_000087_110

Information

Type -
Description -
Location Contig87: 196971-197693
Sequence    

Annotation

kegg
ID rcu:RCOM_1325330
description hypothetical protein
nr
ID XP_002520030.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S211
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1325330 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000087_110 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_093541_010 0.0019642065 - - conserved hypothetical protein [Ricinus communis]
3 Hb_101724_010 0.003009234 - - glutamate receptor family protein [Populus trichocarpa]
4 Hb_005081_050 0.006824245 transcription factor TF Family: MYB-related PREDICTED: transcription factor WER-like [Prunus mume]
5 Hb_006198_160 0.0082756128 - - hypothetical protein POPTR_0002s24290g [Populus trichocarpa]
6 Hb_073680_010 0.0086776817 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
7 Hb_157950_010 0.0087905839 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X1 [Jatropha curcas]
8 Hb_003424_040 0.010084885 - - PREDICTED: putative disease resistance protein RGA1 [Eucalyptus grandis]
9 Hb_015447_010 0.0104857184 - - PREDICTED: uncharacterized protein LOC105111046 [Populus euphratica]
10 Hb_001922_140 0.0115225508 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003849_210 0.0167561635 transcription factor TF Family: ERF hypothetical protein RCOM_0793640 [Ricinus communis]
12 Hb_010128_140 0.0193010089 - - hypothetical protein JCGZ_23164 [Jatropha curcas]
13 Hb_001552_010 0.022770724 - - conserved hypothetical protein [Ricinus communis]
14 Hb_149495_010 0.0234580595 - - putative starch phosphorylase, partial [Sorghum bicolor]
15 Hb_005356_020 0.023499579 - - glutaredoxin, grx, putative [Ricinus communis]
16 Hb_027136_030 0.0239532415 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
17 Hb_002289_160 0.0243850684 - - Polygalacturonase precursor, putative [Ricinus communis]
18 Hb_003687_060 0.0272044989 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003038_020 0.027930256 - - unnamed protein product [Coffea canephora]
20 Hb_005333_090 0.0286878775 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]

Gene co-expression network

sample Hb_000087_110 Hb_000087_110 Hb_093541_010 Hb_093541_010 Hb_000087_110--Hb_093541_010 Hb_101724_010 Hb_101724_010 Hb_000087_110--Hb_101724_010 Hb_005081_050 Hb_005081_050 Hb_000087_110--Hb_005081_050 Hb_006198_160 Hb_006198_160 Hb_000087_110--Hb_006198_160 Hb_073680_010 Hb_073680_010 Hb_000087_110--Hb_073680_010 Hb_157950_010 Hb_157950_010 Hb_000087_110--Hb_157950_010 Hb_093541_010--Hb_101724_010 Hb_093541_010--Hb_006198_160 Hb_015447_010 Hb_015447_010 Hb_093541_010--Hb_015447_010 Hb_093541_010--Hb_005081_050 Hb_093541_010--Hb_073680_010 Hb_101724_010--Hb_006198_160 Hb_101724_010--Hb_015447_010 Hb_101724_010--Hb_005081_050 Hb_101724_010--Hb_073680_010 Hb_005081_050--Hb_073680_010 Hb_005081_050--Hb_157950_010 Hb_003424_040 Hb_003424_040 Hb_005081_050--Hb_003424_040 Hb_001922_140 Hb_001922_140 Hb_005081_050--Hb_001922_140 Hb_006198_160--Hb_015447_010 Hb_003849_210 Hb_003849_210 Hb_006198_160--Hb_003849_210 Hb_010128_140 Hb_010128_140 Hb_006198_160--Hb_010128_140 Hb_073680_010--Hb_157950_010 Hb_073680_010--Hb_003424_040 Hb_073680_010--Hb_001922_140 Hb_157950_010--Hb_003424_040 Hb_157950_010--Hb_001922_140 Hb_157950_010--Hb_093541_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0253339 0.221784 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis