Hb_000087_120

Information

Type -
Description -
Location Contig87: 207876-212031
Sequence    

Annotation

kegg
ID rcu:RCOM_1325310
description AMP dependent CoA ligase, putative (EC:1.13.12.7)
nr
ID XP_002520028.1
description AMP dependent CoA ligase, putative [Ricinus communis]
swissprot
ID P31687
description 4-coumarate--CoA ligase 2 OS=Glycine max PE=2 SV=2
trembl
ID B9S209
description AMP dependent CoA ligase, putative OS=Ricinus communis GN=RCOM_1325310 PE=4 SV=1
Gene Ontology
ID GO:0016207
description 4-coumarate-- ligase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61141: 208206-211858
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000087_120 0.0 - - AMP dependent CoA ligase, putative [Ricinus communis]
2 Hb_002379_060 0.0605682801 - - PREDICTED: MACPF domain-containing protein At1g14780 [Jatropha curcas]
3 Hb_019278_010 0.0772868602 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
4 Hb_170023_010 0.0919767696 - - hypothetical protein EUGRSUZ_C03837 [Eucalyptus grandis]
5 Hb_004709_030 0.0928306562 - - PREDICTED: receptor-like protein 12 [Vitis vinifera]
6 Hb_004324_320 0.1124357403 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
7 Hb_000215_130 0.1215712896 - - PREDICTED: probable pectinesterase 53 [Jatropha curcas]
8 Hb_000072_110 0.1250154261 - - PREDICTED: U-box domain-containing protein 35 [Jatropha curcas]
9 Hb_000365_440 0.1257499367 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
10 Hb_000567_150 0.127334824 - - cysteine protease, putative [Ricinus communis]
11 Hb_026419_010 0.1303530661 - - PREDICTED: cyclin-D3-1-like [Jatropha curcas]
12 Hb_000847_120 0.1341287383 - - hypothetical protein JCGZ_15115 [Jatropha curcas]
13 Hb_004943_010 0.1341546876 - - cationic amino acid transporter, putative [Ricinus communis]
14 Hb_001186_120 0.1342039526 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 5 [Jatropha curcas]
15 Hb_000836_260 0.1365693498 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
16 Hb_001300_140 0.1371022855 - - -
17 Hb_003095_110 0.1399565341 - - GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
18 Hb_000337_030 0.1476633401 - - amino acid transporter, putative [Ricinus communis]
19 Hb_005333_210 0.1489932891 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
20 Hb_000751_070 0.1491901162 - - -

Gene co-expression network

sample Hb_000087_120 Hb_000087_120 Hb_002379_060 Hb_002379_060 Hb_000087_120--Hb_002379_060 Hb_019278_010 Hb_019278_010 Hb_000087_120--Hb_019278_010 Hb_170023_010 Hb_170023_010 Hb_000087_120--Hb_170023_010 Hb_004709_030 Hb_004709_030 Hb_000087_120--Hb_004709_030 Hb_004324_320 Hb_004324_320 Hb_000087_120--Hb_004324_320 Hb_000215_130 Hb_000215_130 Hb_000087_120--Hb_000215_130 Hb_002379_060--Hb_019278_010 Hb_004943_010 Hb_004943_010 Hb_002379_060--Hb_004943_010 Hb_001300_140 Hb_001300_140 Hb_002379_060--Hb_001300_140 Hb_000836_260 Hb_000836_260 Hb_002379_060--Hb_000836_260 Hb_002379_060--Hb_170023_010 Hb_019278_010--Hb_170023_010 Hb_000337_030 Hb_000337_030 Hb_019278_010--Hb_000337_030 Hb_019278_010--Hb_004709_030 Hb_000365_440 Hb_000365_440 Hb_019278_010--Hb_000365_440 Hb_170023_010--Hb_004324_320 Hb_170023_010--Hb_000365_440 Hb_000880_040 Hb_000880_040 Hb_170023_010--Hb_000880_040 Hb_001244_070 Hb_001244_070 Hb_170023_010--Hb_001244_070 Hb_004709_030--Hb_000365_440 Hb_001186_120 Hb_001186_120 Hb_004709_030--Hb_001186_120 Hb_026419_010 Hb_026419_010 Hb_004709_030--Hb_026419_010 Hb_004709_030--Hb_170023_010 Hb_000147_020 Hb_000147_020 Hb_004324_320--Hb_000147_020 Hb_000260_750 Hb_000260_750 Hb_004324_320--Hb_000260_750 Hb_000072_110 Hb_000072_110 Hb_004324_320--Hb_000072_110 Hb_004324_320--Hb_000880_040 Hb_004324_320--Hb_000365_440 Hb_000215_130--Hb_001186_120 Hb_001226_100 Hb_001226_100 Hb_000215_130--Hb_001226_100 Hb_000336_280 Hb_000336_280 Hb_000215_130--Hb_000336_280 Hb_000215_130--Hb_004709_030 Hb_005333_210 Hb_005333_210 Hb_000215_130--Hb_005333_210 Hb_001832_110 Hb_001832_110 Hb_000215_130--Hb_001832_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 7.11827 55.4104 28.3445 0.0376753 0.0358066
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.105234 0.0414036 0 82.4391 79.4542

CAGE analysis