Hb_000087_130

Information

Type -
Description -
Location Contig87: 225465-228454
Sequence    

Annotation

kegg
ID rcu:RCOM_1325300
description hypothetical protein
nr
ID XP_012090908.1
description PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Jatropha curcas]
swissprot
ID Q9M9M6
description NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Arabidopsis thaliana GN=At3g03070 PE=3 SV=1
trembl
ID B9S208
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1325300 PE=4 SV=1
Gene Ontology
ID GO:0008137
description nadh dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61143: 225466-228459 , PASA_asmbl_61144: 227573-228011
cDNA
(Sanger)
(ID:Location)		 027_C10.ab1: 225603-228420

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000087_130 0.0 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Jatropha curcas]
2 Hb_001155_040 0.0635304949 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
3 Hb_072922_020 0.0665337765 - - SNARE-like superfamily protein [Theobroma cacao]
4 Hb_006915_040 0.0671451842 - - PREDICTED: prefoldin subunit 6 [Eucalyptus grandis]
5 Hb_000948_220 0.0676143126 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]
6 Hb_000030_200 0.0700539653 - - PREDICTED: early nodulin-93-like [Populus euphratica]
7 Hb_000384_120 0.0795322869 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
8 Hb_000317_070 0.0804120598 - - PREDICTED: uncharacterized protein LOC103942205 isoform X2 [Pyrus x bretschneideri]
9 Hb_000356_090 0.0808741872 - - PREDICTED: uncharacterized protein At2g38710 [Jatropha curcas]
10 Hb_005463_140 0.085412208 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
11 Hb_002000_140 0.0858173807 - - PREDICTED: thioredoxin Y2, chloroplastic [Jatropha curcas]
12 Hb_002324_010 0.0865034479 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
13 Hb_007441_300 0.0870044306 - - ATP binding protein, putative [Ricinus communis]
14 Hb_001726_040 0.0883332679 - - hypothetical protein CICLE_v10029230mg [Citrus clementina]
15 Hb_000189_240 0.0885612094 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
16 Hb_174865_010 0.0894741765 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
17 Hb_010560_030 0.0903703477 - - PREDICTED: mitochondrial pyruvate carrier 4-like [Jatropha curcas]
18 Hb_002838_030 0.090742092 - - 40S ribosomal protein S25A [Hevea brasiliensis]
19 Hb_001053_140 0.0911397711 - - PREDICTED: ATP synthase subunit O, mitochondrial [Jatropha curcas]
20 Hb_002081_030 0.0920957573 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_000087_130 Hb_000087_130 Hb_001155_040 Hb_001155_040 Hb_000087_130--Hb_001155_040 Hb_072922_020 Hb_072922_020 Hb_000087_130--Hb_072922_020 Hb_006915_040 Hb_006915_040 Hb_000087_130--Hb_006915_040 Hb_000948_220 Hb_000948_220 Hb_000087_130--Hb_000948_220 Hb_000030_200 Hb_000030_200 Hb_000087_130--Hb_000030_200 Hb_000384_120 Hb_000384_120 Hb_000087_130--Hb_000384_120 Hb_006452_040 Hb_006452_040 Hb_001155_040--Hb_006452_040 Hb_005463_140 Hb_005463_140 Hb_001155_040--Hb_005463_140 Hb_000062_390 Hb_000062_390 Hb_001155_040--Hb_000062_390 Hb_007317_160 Hb_007317_160 Hb_001155_040--Hb_007317_160 Hb_000389_080 Hb_000389_080 Hb_001155_040--Hb_000389_080 Hb_072922_020--Hb_005463_140 Hb_072922_020--Hb_000384_120 Hb_000302_280 Hb_000302_280 Hb_072922_020--Hb_000302_280 Hb_000254_050 Hb_000254_050 Hb_072922_020--Hb_000254_050 Hb_000789_230 Hb_000789_230 Hb_072922_020--Hb_000789_230 Hb_000189_240 Hb_000189_240 Hb_006915_040--Hb_000189_240 Hb_002000_140 Hb_002000_140 Hb_006915_040--Hb_002000_140 Hb_179296_010 Hb_179296_010 Hb_006915_040--Hb_179296_010 Hb_174865_010 Hb_174865_010 Hb_006915_040--Hb_174865_010 Hb_003376_190 Hb_003376_190 Hb_006915_040--Hb_003376_190 Hb_007120_090 Hb_007120_090 Hb_000948_220--Hb_007120_090 Hb_002838_030 Hb_002838_030 Hb_000948_220--Hb_002838_030 Hb_000948_220--Hb_001155_040 Hb_000317_070 Hb_000317_070 Hb_000948_220--Hb_000317_070 Hb_000948_220--Hb_174865_010 Hb_000030_200--Hb_072922_020 Hb_000030_200--Hb_000948_220 Hb_000030_200--Hb_000384_120 Hb_000030_200--Hb_001155_040 Hb_010560_030 Hb_010560_030 Hb_000030_200--Hb_010560_030 Hb_000417_260 Hb_000417_260 Hb_000384_120--Hb_000417_260 Hb_003880_030 Hb_003880_030 Hb_000384_120--Hb_003880_030 Hb_000922_040 Hb_000922_040 Hb_000384_120--Hb_000922_040 Hb_005269_080 Hb_005269_080 Hb_000384_120--Hb_005269_080 Hb_002324_010 Hb_002324_010 Hb_000384_120--Hb_002324_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
83.0038 38.9182 97.3587 184.554 44.7065 71.1239
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
277.041 439.853 178.322 103.925 78.6971

CAGE analysis