Hb_000087_140

Information

Type -
Description -
Location Contig87: 229149-242979
Sequence    

Annotation

kegg
ID rcu:RCOM_1325190
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012090909.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g27270 isoform X1 [Jatropha curcas]
swissprot
ID O04647
description Pentatricopeptide repeat-containing protein At5g27270 OS=Arabidopsis thaliana GN=EMB976 PE=2 SV=2
trembl
ID B9S207
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1325190 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61146: 230103-230827 , PASA_asmbl_61147: 238762-238971 , PASA_asmbl_61149: 241285-242811
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000087_140 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27270 isoform X1 [Jatropha curcas]
2 Hb_001790_080 0.08427958 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic isoform X3 [Jatropha curcas]
3 Hb_036790_080 0.0854670985 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 39 [Jatropha curcas]
4 Hb_000130_320 0.0940936918 desease resistance Gene Name: AAA PREDICTED: uncharacterized protein ycf45 [Jatropha curcas]
5 Hb_000349_240 0.0950946612 - - PREDICTED: probable aminotransferase ACS10 isoform X1 [Jatropha curcas]
6 Hb_001435_030 0.0993944766 - - PREDICTED: uncharacterized protein LOC105645073 [Jatropha curcas]
7 Hb_003952_060 0.1006097253 - - hypothetical protein POPTR_0016s11000g [Populus trichocarpa]
8 Hb_003475_020 0.1011316412 - - hypothetical protein JCGZ_13177 [Jatropha curcas]
9 Hb_005253_030 0.1058348217 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_005250_030 0.1070014021 - - PREDICTED: uncharacterized protein LOC105640177 [Jatropha curcas]
11 Hb_002217_260 0.1075343009 - - PREDICTED: uncharacterized protein LOC105643577 [Jatropha curcas]
12 Hb_000007_010 0.1076064867 - - PREDICTED: protein PHYLLO, chloroplastic [Jatropha curcas]
13 Hb_000033_110 0.1076724236 - - hypothetical protein JCGZ_19253 [Jatropha curcas]
14 Hb_012098_070 0.107704278 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
15 Hb_018118_010 0.1079397005 - - DNA polymerase I, putative [Ricinus communis]
16 Hb_007922_020 0.1095272238 - - PREDICTED: uncharacterized protein LOC105646505 [Jatropha curcas]
17 Hb_001259_020 0.1096584529 - - PREDICTED: translocase of chloroplast 90, chloroplastic [Jatropha curcas]
18 Hb_000815_170 0.1106774147 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
19 Hb_009252_040 0.1112765767 - - PREDICTED: protein EXECUTER 2, chloroplastic [Jatropha curcas]
20 Hb_156279_010 0.1121285732 transcription factor TF Family: Jumonji PREDICTED: uncharacterized protein LOC105641053 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000087_140 Hb_000087_140 Hb_001790_080 Hb_001790_080 Hb_000087_140--Hb_001790_080 Hb_036790_080 Hb_036790_080 Hb_000087_140--Hb_036790_080 Hb_000130_320 Hb_000130_320 Hb_000087_140--Hb_000130_320 Hb_000349_240 Hb_000349_240 Hb_000087_140--Hb_000349_240 Hb_001435_030 Hb_001435_030 Hb_000087_140--Hb_001435_030 Hb_003952_060 Hb_003952_060 Hb_000087_140--Hb_003952_060 Hb_001790_080--Hb_000130_320 Hb_001790_080--Hb_000349_240 Hb_029584_070 Hb_029584_070 Hb_001790_080--Hb_029584_070 Hb_001163_060 Hb_001163_060 Hb_001790_080--Hb_001163_060 Hb_003475_020 Hb_003475_020 Hb_001790_080--Hb_003475_020 Hb_001936_090 Hb_001936_090 Hb_001790_080--Hb_001936_090 Hb_005253_030 Hb_005253_030 Hb_036790_080--Hb_005253_030 Hb_032920_050 Hb_032920_050 Hb_036790_080--Hb_032920_050 Hb_000261_060 Hb_000261_060 Hb_036790_080--Hb_000261_060 Hb_003020_030 Hb_003020_030 Hb_036790_080--Hb_003020_030 Hb_036790_080--Hb_000130_320 Hb_036790_080--Hb_001435_030 Hb_000648_040 Hb_000648_040 Hb_000130_320--Hb_000648_040 Hb_002758_010 Hb_002758_010 Hb_000130_320--Hb_002758_010 Hb_000130_320--Hb_032920_050 Hb_000749_090 Hb_000749_090 Hb_000130_320--Hb_000749_090 Hb_000130_320--Hb_001936_090 Hb_018118_010 Hb_018118_010 Hb_000349_240--Hb_018118_010 Hb_009252_040 Hb_009252_040 Hb_000349_240--Hb_009252_040 Hb_000033_110 Hb_000033_110 Hb_000349_240--Hb_000033_110 Hb_000007_010 Hb_000007_010 Hb_000349_240--Hb_000007_010 Hb_001435_030--Hb_000261_060 Hb_000027_190 Hb_000027_190 Hb_001435_030--Hb_000027_190 Hb_002055_040 Hb_002055_040 Hb_001435_030--Hb_002055_040 Hb_001435_030--Hb_005253_030 Hb_003467_030 Hb_003467_030 Hb_001435_030--Hb_003467_030 Hb_003952_060--Hb_001435_030 Hb_002217_260 Hb_002217_260 Hb_003952_060--Hb_002217_260 Hb_003952_060--Hb_036790_080 Hb_003952_060--Hb_001163_060 Hb_003952_060--Hb_002055_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.17676 2.58562 2.70809 1.38095 3.08349 3.91189
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.50116 2.64148 2.88028 3.22979 10.0247

CAGE analysis