Hb_000087_180

Information

Type -
Description -
Location Contig87: 295883-296249
Sequence    

Annotation

kegg
ID rcu:RCOM_0704120
description hypothetical protein
nr
ID XP_002524380.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SEG1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0704120 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61152: 295812-296422
cDNA
(Sanger)
(ID:Location)		 003_C04.ab1: 295822-296422 , 006_M18.ab1: 295822-296421 , 012_H13.ab1: 295822-296422 , 016_I06.ab1: 295822-296422 , 017_O05.ab1: 295822-296422 , 032_K03.ab1: 295812-296422 , 033_E16.ab1: 295822-296355 , 039_P20.ab1: 295822-296421 , 042_L04.ab1: 295822-296418 , 049_G15.ab1: 295825-296388

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000087_180 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_017434_020 0.0772101537 transcription factor TF Family: C2H2 Zinc finger protein 4 [Populus trichocarpa]
3 Hb_005183_010 0.0982633501 - - PREDICTED: probable calcium-binding protein CML17 [Malus domestica]
4 Hb_004968_050 0.1188771566 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
5 Hb_000506_130 0.1266312034 - - DGCR14-related family protein [Populus trichocarpa]
6 Hb_005714_140 0.1322808418 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
7 Hb_000417_230 0.1373998499 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000506_140 0.137932352 - - hypothetical protein PRUPE_ppb019425mg [Prunus persica]
9 Hb_002107_080 0.1385599669 - - JHL20J20.3 [Jatropha curcas]
10 Hb_183539_010 0.141028374 - - hypothetical protein POPTR_0005s04441g [Populus trichocarpa]
11 Hb_107495_050 0.1430176832 transcription factor TF Family: MIKC mads box protein, putative [Ricinus communis]
12 Hb_029238_020 0.1444120356 - - PREDICTED: expansin-like A1 [Jatropha curcas]
13 Hb_073973_180 0.1461700576 - - PREDICTED: WAT1-related protein At4g08290 isoform X1 [Populus euphratica]
14 Hb_000260_130 0.1480517297 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
15 Hb_000029_280 0.148118523 - - PREDICTED: uncharacterized protein LOC105631804 [Jatropha curcas]
16 Hb_000318_320 0.1499252992 - - PREDICTED: transmembrane protein 45B [Jatropha curcas]
17 Hb_000668_170 0.1508953628 - - sulfate transporter, putative [Ricinus communis]
18 Hb_002820_090 0.1512383143 - - PREDICTED: WAT1-related protein At1g21890-like [Jatropha curcas]
19 Hb_000252_190 0.1515413344 - - PREDICTED: uncharacterized protein LOC105644975 [Jatropha curcas]
20 Hb_087468_010 0.154528717 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]

Gene co-expression network

sample Hb_000087_180 Hb_000087_180 Hb_017434_020 Hb_017434_020 Hb_000087_180--Hb_017434_020 Hb_005183_010 Hb_005183_010 Hb_000087_180--Hb_005183_010 Hb_004968_050 Hb_004968_050 Hb_000087_180--Hb_004968_050 Hb_000506_130 Hb_000506_130 Hb_000087_180--Hb_000506_130 Hb_005714_140 Hb_005714_140 Hb_000087_180--Hb_005714_140 Hb_000417_230 Hb_000417_230 Hb_000087_180--Hb_000417_230 Hb_183539_010 Hb_183539_010 Hb_017434_020--Hb_183539_010 Hb_017434_020--Hb_000506_130 Hb_000506_140 Hb_000506_140 Hb_017434_020--Hb_000506_140 Hb_017434_020--Hb_005183_010 Hb_004607_180 Hb_004607_180 Hb_017434_020--Hb_004607_180 Hb_012395_260 Hb_012395_260 Hb_005183_010--Hb_012395_260 Hb_005183_010--Hb_004968_050 Hb_000668_170 Hb_000668_170 Hb_005183_010--Hb_000668_170 Hb_005183_010--Hb_000417_230 Hb_002107_080 Hb_002107_080 Hb_004968_050--Hb_002107_080 Hb_004968_050--Hb_000417_230 Hb_073973_180 Hb_073973_180 Hb_004968_050--Hb_073973_180 Hb_000318_320 Hb_000318_320 Hb_004968_050--Hb_000318_320 Hb_000245_270 Hb_000245_270 Hb_000506_130--Hb_000245_270 Hb_000506_130--Hb_000506_140 Hb_052113_020 Hb_052113_020 Hb_000506_130--Hb_052113_020 Hb_029238_020 Hb_029238_020 Hb_000506_130--Hb_029238_020 Hb_004143_050 Hb_004143_050 Hb_000506_130--Hb_004143_050 Hb_000260_130 Hb_000260_130 Hb_005714_140--Hb_000260_130 Hb_002267_030 Hb_002267_030 Hb_005714_140--Hb_002267_030 Hb_000252_190 Hb_000252_190 Hb_005714_140--Hb_000252_190 Hb_002820_090 Hb_002820_090 Hb_005714_140--Hb_002820_090 Hb_004242_160 Hb_004242_160 Hb_005714_140--Hb_004242_160 Hb_000060_100 Hb_000060_100 Hb_005714_140--Hb_000060_100 Hb_094839_010 Hb_094839_010 Hb_000417_230--Hb_094839_010 Hb_000417_230--Hb_002107_080 Hb_000417_230--Hb_073973_180 Hb_010573_030 Hb_010573_030 Hb_000417_230--Hb_010573_030 Hb_003071_040 Hb_003071_040 Hb_000417_230--Hb_003071_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
107.827 6826.54 504.675 2913.73 115.14 149.92
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.71073 7.8703 0 151.727 449.912

CAGE analysis