Hb_000087_190

Information

Type -
Description -
Location Contig87: 298606-299168
Sequence    

Annotation

kegg
ID cic:CICLE_v10033278mg
description hypothetical protein
nr
ID XP_006437764.1
description hypothetical protein CICLE_v10033278mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID A0A067G365
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035400mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61153: 298619-299164
cDNA
(Sanger)
(ID:Location)		 018_C05.ab1: 298626-299164 , 042_G24.ab1: 298626-299164

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000087_190 0.0 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]
2 Hb_003582_030 0.0746421599 - - PREDICTED: serine/threonine-protein kinase BRI1-like 2 [Jatropha curcas]
3 Hb_000098_230 0.0886834154 - - Potassium channel AKT2/3, putative [Ricinus communis]
4 Hb_001541_170 0.0935594915 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
5 Hb_000030_230 0.0944248109 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
6 Hb_000197_260 0.0984788568 - - hypothetical protein PRUPE_ppa025448mg [Prunus persica]
7 Hb_000137_050 0.1009605807 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000847_110 0.1028631446 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005183_070 0.1106190934 - - PREDICTED: calmodulin-like protein 5 [Solanum lycopersicum]
10 Hb_000307_060 0.1119955489 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
11 Hb_002186_110 0.1128971166 - - hypothetical protein CICLE_v10024045mg, partial [Citrus clementina]
12 Hb_001418_050 0.1156762379 - - PREDICTED: uncharacterized protein LOC105631088 [Jatropha curcas]
13 Hb_000317_170 0.1192190688 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
14 Hb_002186_170 0.1195147472 - - hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
15 Hb_152914_010 0.1201139138 - - PREDICTED: polcalcin Syr v 3-like [Nicotiana sylvestris]
16 Hb_007101_070 0.1213592455 - - PREDICTED: serine/threonine-protein kinase PBS1 [Jatropha curcas]
17 Hb_000327_320 0.1234180735 - - PREDICTED: probable receptor-like protein kinase At2g39360 [Jatropha curcas]
18 Hb_007441_100 0.1282120198 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 12 [Populus euphratica]
19 Hb_000614_120 0.1283895021 - - hypothetical protein JCGZ_17923 [Jatropha curcas]
20 Hb_180980_010 0.128522419 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Malus domestica]

Gene co-expression network

sample Hb_000087_190 Hb_000087_190 Hb_003582_030 Hb_003582_030 Hb_000087_190--Hb_003582_030 Hb_000098_230 Hb_000098_230 Hb_000087_190--Hb_000098_230 Hb_001541_170 Hb_001541_170 Hb_000087_190--Hb_001541_170 Hb_000030_230 Hb_000030_230 Hb_000087_190--Hb_000030_230 Hb_000197_260 Hb_000197_260 Hb_000087_190--Hb_000197_260 Hb_000137_050 Hb_000137_050 Hb_000087_190--Hb_000137_050 Hb_003582_030--Hb_000098_230 Hb_000646_040 Hb_000646_040 Hb_003582_030--Hb_000646_040 Hb_003582_030--Hb_000030_230 Hb_002186_170 Hb_002186_170 Hb_003582_030--Hb_002186_170 Hb_003582_030--Hb_000197_260 Hb_000098_230--Hb_001541_170 Hb_007919_010 Hb_007919_010 Hb_000098_230--Hb_007919_010 Hb_001418_050 Hb_001418_050 Hb_000098_230--Hb_001418_050 Hb_000422_060 Hb_000422_060 Hb_000098_230--Hb_000422_060 Hb_007441_100 Hb_007441_100 Hb_000098_230--Hb_007441_100 Hb_001579_160 Hb_001579_160 Hb_001541_170--Hb_001579_160 Hb_005588_050 Hb_005588_050 Hb_001541_170--Hb_005588_050 Hb_009421_060 Hb_009421_060 Hb_001541_170--Hb_009421_060 Hb_001541_170--Hb_007919_010 Hb_004158_040 Hb_004158_040 Hb_001541_170--Hb_004158_040 Hb_000307_060 Hb_000307_060 Hb_000030_230--Hb_000307_060 Hb_000317_170 Hb_000317_170 Hb_000030_230--Hb_000317_170 Hb_000000_260 Hb_000000_260 Hb_000030_230--Hb_000000_260 Hb_002186_110 Hb_002186_110 Hb_000030_230--Hb_002186_110 Hb_005183_070 Hb_005183_070 Hb_000197_260--Hb_005183_070 Hb_152914_010 Hb_152914_010 Hb_000197_260--Hb_152914_010 Hb_029665_010 Hb_029665_010 Hb_000197_260--Hb_029665_010 Hb_001680_050 Hb_001680_050 Hb_000197_260--Hb_001680_050 Hb_000197_260--Hb_002186_110 Hb_007579_030 Hb_007579_030 Hb_000197_260--Hb_007579_030 Hb_000137_050--Hb_152914_010 Hb_000856_030 Hb_000856_030 Hb_000137_050--Hb_000856_030 Hb_000137_050--Hb_000197_260 Hb_004917_020 Hb_004917_020 Hb_000137_050--Hb_004917_020 Hb_180980_010 Hb_180980_010 Hb_000137_050--Hb_180980_010 Hb_000137_050--Hb_000317_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.41355 151.539 73.4269 683.632 7.71042 13.8746
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.903028 0.236448 0 21.7782 157.441

CAGE analysis