Hb_000088_010

Information

Type -
Description -
Location Contig88: 19264-21776
Sequence    

Annotation

kegg
ID rcu:RCOM_1333850
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002521822.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9LRV9
description Pentatricopeptide repeat-containing protein At3g13880 OS=Arabidopsis thaliana GN=PCMP-E89 PE=2 SV=1
trembl
ID B9S753
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1333850 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61375: 20982-21350
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000088_010 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_012395_190 0.0794388366 - - hypothetical protein B456_005G053800 [Gossypium raimondii]
3 Hb_007943_080 0.0906258314 - - PREDICTED: cyclin-dependent kinase F-1 isoform X1 [Jatropha curcas]
4 Hb_002903_110 0.0928006394 - - PREDICTED: RNA polymerase-associated protein RTF1 homolog [Jatropha curcas]
5 Hb_000358_080 0.0940682816 - - Ribonuclease 3 [Gossypium arboreum]
6 Hb_006091_030 0.1033782239 desease resistance Gene Name: AAA PREDICTED: cell division control protein 48 homolog C-like isoform X1 [Jatropha curcas]
7 Hb_003861_080 0.1056682311 - - PREDICTED: DNA polymerase kappa isoform X2 [Jatropha curcas]
8 Hb_004046_010 0.1060629655 - - PREDICTED: uncharacterized protein LOC105632478 isoform X2 [Jatropha curcas]
9 Hb_000608_120 0.1064845495 - - PREDICTED: uncharacterized protein LOC105644872 [Jatropha curcas]
10 Hb_002890_340 0.1066934025 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
11 Hb_000490_030 0.1125148884 - - DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
12 Hb_001936_050 0.1129099195 - - PREDICTED: pentatricopeptide repeat-containing protein At4g08210-like [Prunus mume]
13 Hb_000134_350 0.113787155 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8-like [Jatropha curcas]
14 Hb_003581_140 0.1138157066 - - PREDICTED: hypersensitive-induced response protein 1-like [Nelumbo nucifera]
15 Hb_002039_010 0.115012683 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
16 Hb_049675_010 0.1167760752 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
17 Hb_000369_060 0.1174548304 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
18 Hb_000805_090 0.1183382303 - - hypothetical protein POPTR_0009s03890g [Populus trichocarpa]
19 Hb_000122_130 0.1190008945 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000413_180 0.1191725459 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000088_010 Hb_000088_010 Hb_012395_190 Hb_012395_190 Hb_000088_010--Hb_012395_190 Hb_007943_080 Hb_007943_080 Hb_000088_010--Hb_007943_080 Hb_002903_110 Hb_002903_110 Hb_000088_010--Hb_002903_110 Hb_000358_080 Hb_000358_080 Hb_000088_010--Hb_000358_080 Hb_006091_030 Hb_006091_030 Hb_000088_010--Hb_006091_030 Hb_003861_080 Hb_003861_080 Hb_000088_010--Hb_003861_080 Hb_049675_010 Hb_049675_010 Hb_012395_190--Hb_049675_010 Hb_012395_190--Hb_007943_080 Hb_000122_130 Hb_000122_130 Hb_012395_190--Hb_000122_130 Hb_010710_010 Hb_010710_010 Hb_012395_190--Hb_010710_010 Hb_000497_140 Hb_000497_140 Hb_012395_190--Hb_000497_140 Hb_007943_080--Hb_000358_080 Hb_000120_050 Hb_000120_050 Hb_007943_080--Hb_000120_050 Hb_007558_140 Hb_007558_140 Hb_007943_080--Hb_007558_140 Hb_007943_080--Hb_003861_080 Hb_098993_010 Hb_098993_010 Hb_007943_080--Hb_098993_010 Hb_000134_350 Hb_000134_350 Hb_007943_080--Hb_000134_350 Hb_002477_260 Hb_002477_260 Hb_002903_110--Hb_002477_260 Hb_002903_110--Hb_000358_080 Hb_000608_120 Hb_000608_120 Hb_002903_110--Hb_000608_120 Hb_001047_020 Hb_001047_020 Hb_002903_110--Hb_001047_020 Hb_004046_010 Hb_004046_010 Hb_002903_110--Hb_004046_010 Hb_000490_030 Hb_000490_030 Hb_000358_080--Hb_000490_030 Hb_001936_050 Hb_001936_050 Hb_000358_080--Hb_001936_050 Hb_000138_040 Hb_000138_040 Hb_000358_080--Hb_000138_040 Hb_000358_080--Hb_006091_030 Hb_000358_080--Hb_010710_010 Hb_006091_030--Hb_000490_030 Hb_002874_070 Hb_002874_070 Hb_006091_030--Hb_002874_070 Hb_000016_110 Hb_000016_110 Hb_006091_030--Hb_000016_110 Hb_000413_130 Hb_000413_130 Hb_006091_030--Hb_000413_130 Hb_000078_130 Hb_000078_130 Hb_006091_030--Hb_000078_130 Hb_003861_080--Hb_004046_010 Hb_000110_160 Hb_000110_160 Hb_003861_080--Hb_000110_160 Hb_001635_100 Hb_001635_100 Hb_003861_080--Hb_001635_100 Hb_000805_090 Hb_000805_090 Hb_003861_080--Hb_000805_090 Hb_001157_030 Hb_001157_030 Hb_003861_080--Hb_001157_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.49575 0.474764 0.0851948 0.0591452 1.20987 1.69592
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.781557 0.614679 1.65692 0.544118 0.334785

CAGE analysis