Hb_000088_020

Information

Type transcription factor
Description TF Family: M-type
Location Contig88: 24335-24823
Sequence    

Annotation

kegg
ID pop:POPTR_0013s11210g
description hypothetical protein
nr
ID KDP35104.1
description hypothetical protein JCGZ_10946 [Jatropha curcas]
swissprot
ID Q9FJK3
description Agamous-like MADS-box protein AGL80 OS=Arabidopsis thaliana GN=AGL80 PE=1 SV=1
trembl
ID A0A067KTD6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10946 PE=4 SV=1
Gene Ontology
ID GO:0005488
description agamous-like mads-box protein agl80

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000088_020 0.0 transcription factor TF Family: M-type hypothetical protein JCGZ_10946 [Jatropha curcas]
2 Hb_006913_040 0.0901580573 - - PREDICTED: hydroxyacylglutathione hydrolase cytoplasmic [Jatropha curcas]
3 Hb_000333_100 0.0957749381 - - PREDICTED: tubulin--tyrosine ligase-like protein 12 isoform X1 [Jatropha curcas]
4 Hb_002942_160 0.095924123 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
5 Hb_000866_030 0.0999754343 - - hypothetical protein RCOM_1615820 [Ricinus communis]
6 Hb_031862_180 0.1035143008 - - PREDICTED: uncharacterized protein LOC105644669 [Jatropha curcas]
7 Hb_007643_050 0.1045077868 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_187739_020 0.1052559133 - - PREDICTED: B2 protein [Jatropha curcas]
9 Hb_000316_030 0.1088242943 - - zinc finger protein, putative [Ricinus communis]
10 Hb_005000_100 0.1094407534 - - PCI domain-containing protein 2 [Morus notabilis]
11 Hb_063047_010 0.1104222265 - - peroxisomal targeting signal type 1 (pts1) receptor, putative [Ricinus communis]
12 Hb_001829_010 0.1109664255 - - PREDICTED: general transcription factor 3C polypeptide 3-like isoform X2 [Jatropha curcas]
13 Hb_000284_210 0.1116254508 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000699_250 0.1127851342 - - Poly(rC)-binding protein, putative [Ricinus communis]
15 Hb_002097_090 0.1127897422 - - Splicing factor 3A subunit, putative [Ricinus communis]
16 Hb_008714_020 0.113058235 - - PREDICTED: GTP-binding protein SAR1A-like [Jatropha curcas]
17 Hb_002716_140 0.11330894 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
18 Hb_000684_420 0.1133145972 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
19 Hb_002253_040 0.1142828241 - - PREDICTED: BTB/POZ domain-containing protein At2g13690 [Jatropha curcas]
20 Hb_004970_150 0.114441753 - - PREDICTED: uncharacterized protein LOC105633636 [Jatropha curcas]

Gene co-expression network

sample Hb_000088_020 Hb_000088_020 Hb_006913_040 Hb_006913_040 Hb_000088_020--Hb_006913_040 Hb_000333_100 Hb_000333_100 Hb_000088_020--Hb_000333_100 Hb_002942_160 Hb_002942_160 Hb_000088_020--Hb_002942_160 Hb_000866_030 Hb_000866_030 Hb_000088_020--Hb_000866_030 Hb_031862_180 Hb_031862_180 Hb_000088_020--Hb_031862_180 Hb_007643_050 Hb_007643_050 Hb_000088_020--Hb_007643_050 Hb_000645_150 Hb_000645_150 Hb_006913_040--Hb_000645_150 Hb_001829_010 Hb_001829_010 Hb_006913_040--Hb_001829_010 Hb_001019_170 Hb_001019_170 Hb_006913_040--Hb_001019_170 Hb_002820_040 Hb_002820_040 Hb_006913_040--Hb_002820_040 Hb_002097_090 Hb_002097_090 Hb_006913_040--Hb_002097_090 Hb_006913_040--Hb_000333_100 Hb_000333_100--Hb_007643_050 Hb_031091_010 Hb_031091_010 Hb_000333_100--Hb_031091_010 Hb_008695_120 Hb_008695_120 Hb_000333_100--Hb_008695_120 Hb_002374_350 Hb_002374_350 Hb_000333_100--Hb_002374_350 Hb_000333_100--Hb_001019_170 Hb_010931_080 Hb_010931_080 Hb_002942_160--Hb_010931_080 Hb_002044_060 Hb_002044_060 Hb_002942_160--Hb_002044_060 Hb_004370_030 Hb_004370_030 Hb_002942_160--Hb_004370_030 Hb_000789_080 Hb_000789_080 Hb_002942_160--Hb_000789_080 Hb_000364_080 Hb_000364_080 Hb_002942_160--Hb_000364_080 Hb_002942_160--Hb_008695_120 Hb_187739_020 Hb_187739_020 Hb_000866_030--Hb_187739_020 Hb_000866_030--Hb_006913_040 Hb_008714_020 Hb_008714_020 Hb_000866_030--Hb_008714_020 Hb_002982_040 Hb_002982_040 Hb_000866_030--Hb_002982_040 Hb_027028_020 Hb_027028_020 Hb_000866_030--Hb_027028_020 Hb_000866_030--Hb_002942_160 Hb_002716_140 Hb_002716_140 Hb_031862_180--Hb_002716_140 Hb_031862_180--Hb_007643_050 Hb_031862_180--Hb_187739_020 Hb_031862_180--Hb_000364_080 Hb_031862_180--Hb_008695_120 Hb_002067_020 Hb_002067_020 Hb_031862_180--Hb_002067_020 Hb_002475_160 Hb_002475_160 Hb_007643_050--Hb_002475_160 Hb_011942_080 Hb_011942_080 Hb_007643_050--Hb_011942_080 Hb_001616_090 Hb_001616_090 Hb_007643_050--Hb_001616_090 Hb_000116_110 Hb_000116_110 Hb_007643_050--Hb_000116_110 Hb_007643_050--Hb_031091_010 Hb_001158_220 Hb_001158_220 Hb_007643_050--Hb_001158_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.7038 2.37413 0.855649 0.950506 2.84767 7.62337
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.78484 2.18771 1.10669 1.4127 1.0173

CAGE analysis