Hb_000088_030

Information

Type -
Description -
Location Contig88: 28420-29708
Sequence    

Annotation

kegg
ID rcu:RCOM_1333820
description hypothetical protein
nr
ID KDP35105.1
description hypothetical protein JCGZ_10947 [Jatropha curcas]
swissprot
ID Q6UW68
description Transmembrane protein 205 OS=Homo sapiens GN=TMEM205 PE=1 SV=1
trembl
ID A0A067KS45
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10947 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000088_030 0.0 - - hypothetical protein JCGZ_10947 [Jatropha curcas]
2 Hb_140595_010 0.1787304729 - - -
3 Hb_000318_260 0.180240772 - - PREDICTED: cell division cycle-associated 7-like protein [Jatropha curcas]
4 Hb_002903_120 0.19949063 - - -
5 Hb_002483_020 0.2183955973 - - -
6 Hb_045502_010 0.2255426709 - - prefoldin subunit 1 [Jatropha curcas]
7 Hb_000580_130 0.2284513289 - - hypothetical protein JCGZ_14541 [Jatropha curcas]
8 Hb_010603_030 0.2311212191 - - -
9 Hb_000038_150 0.2318151568 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 homolog [Jatropha curcas]
10 Hb_004659_070 0.2322636404 - - PREDICTED: organ-specific protein P4-like [Vitis vinifera]
11 Hb_000062_380 0.2356907179 - - PREDICTED: putative F-box protein At1g67623 [Jatropha curcas]
12 Hb_008406_130 0.2359933336 - - -
13 Hb_000544_120 0.238099607 - - PREDICTED: thymidylate kinase [Jatropha curcas]
14 Hb_179511_010 0.2383054901 - - -
15 Hb_000976_180 0.2415653955 - - PREDICTED: uncharacterized protein LOC102592049 [Solanum tuberosum]
16 Hb_004048_140 0.243499849 - - -
17 Hb_004712_110 0.2446917562 - - 30S ribosomal protein S10, putative [Ricinus communis]
18 Hb_000173_210 0.2449161865 - - PREDICTED: serine incorporator 3 [Jatropha curcas]
19 Hb_000525_060 0.2476568813 - - PREDICTED: uncharacterized protein LOC104211307 [Nicotiana sylvestris]
20 Hb_149731_010 0.2518444705 - - -

Gene co-expression network

sample Hb_000088_030 Hb_000088_030 Hb_140595_010 Hb_140595_010 Hb_000088_030--Hb_140595_010 Hb_000318_260 Hb_000318_260 Hb_000088_030--Hb_000318_260 Hb_002903_120 Hb_002903_120 Hb_000088_030--Hb_002903_120 Hb_002483_020 Hb_002483_020 Hb_000088_030--Hb_002483_020 Hb_045502_010 Hb_045502_010 Hb_000088_030--Hb_045502_010 Hb_000580_130 Hb_000580_130 Hb_000088_030--Hb_000580_130 Hb_000544_120 Hb_000544_120 Hb_140595_010--Hb_000544_120 Hb_140595_010--Hb_000580_130 Hb_006631_010 Hb_006631_010 Hb_140595_010--Hb_006631_010 Hb_107847_010 Hb_107847_010 Hb_140595_010--Hb_107847_010 Hb_125861_010 Hb_125861_010 Hb_140595_010--Hb_125861_010 Hb_004712_110 Hb_004712_110 Hb_000318_260--Hb_004712_110 Hb_000987_050 Hb_000987_050 Hb_000318_260--Hb_000987_050 Hb_000424_160 Hb_000424_160 Hb_000318_260--Hb_000424_160 Hb_000317_080 Hb_000317_080 Hb_000318_260--Hb_000317_080 Hb_000976_180 Hb_000976_180 Hb_000318_260--Hb_000976_180 Hb_010368_070 Hb_010368_070 Hb_002903_120--Hb_010368_070 Hb_000173_210 Hb_000173_210 Hb_002903_120--Hb_000173_210 Hb_002897_040 Hb_002897_040 Hb_002903_120--Hb_002897_040 Hb_000525_040 Hb_000525_040 Hb_002903_120--Hb_000525_040 Hb_002903_120--Hb_045502_010 Hb_002903_120--Hb_000544_120 Hb_002483_020--Hb_140595_010 Hb_000062_380 Hb_000062_380 Hb_002483_020--Hb_000062_380 Hb_002483_020--Hb_000318_260 Hb_089140_080 Hb_089140_080 Hb_002483_020--Hb_089140_080 Hb_002483_020--Hb_006631_010 Hb_000619_070 Hb_000619_070 Hb_045502_010--Hb_000619_070 Hb_035360_010 Hb_035360_010 Hb_045502_010--Hb_035360_010 Hb_000038_150 Hb_000038_150 Hb_045502_010--Hb_000038_150 Hb_003581_110 Hb_003581_110 Hb_045502_010--Hb_003581_110 Hb_003673_020 Hb_003673_020 Hb_045502_010--Hb_003673_020 Hb_000392_280 Hb_000392_280 Hb_045502_010--Hb_000392_280 Hb_000120_570 Hb_000120_570 Hb_000580_130--Hb_000120_570 Hb_001534_070 Hb_001534_070 Hb_000580_130--Hb_001534_070 Hb_001922_130 Hb_001922_130 Hb_000580_130--Hb_001922_130 Hb_003125_140 Hb_003125_140 Hb_000580_130--Hb_003125_140 Hb_001703_130 Hb_001703_130 Hb_000580_130--Hb_001703_130 Hb_063409_020 Hb_063409_020 Hb_000580_130--Hb_063409_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.192034 0.0163927 0.119522 0.01523 0.48919 0.156021
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0450637 0.0708908 0 0.0142235 0

CAGE analysis