Hb_000088_040

Information

Type -
Description -
Location Contig88: 46686-49736
Sequence    

Annotation

kegg
ID rcu:RCOM_1333600
description synaptotagmin, putative
nr
ID XP_012075480.1
description PREDICTED: multiple C2 and transmembrane domain-containing protein 2 [Jatropha curcas]
swissprot
ID B8XCH5
description Protein QUIRKY OS=Arabidopsis thaliana GN=QKY PE=2 SV=1
trembl
ID A0A067KG46
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10949 PE=4 SV=1
Gene Ontology
ID GO:0009506
description multiple c2 and transmembrane domain-containing protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61377: 46349-46474 , PASA_asmbl_61378: 46723-47237 , PASA_asmbl_61380: 48598-49332
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000088_040 0.0 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 2 [Jatropha curcas]
2 Hb_176022_020 0.0922722668 - - cytochrome P450, putative [Ricinus communis]
3 Hb_000230_110 0.1047309052 - - PREDICTED: uncharacterized protein LOC105647634 [Jatropha curcas]
4 Hb_003404_030 0.1111395736 - - PREDICTED: monogalactosyldiacylglycerol synthase 2, chloroplastic-like isoform X1 [Jatropha curcas]
5 Hb_012055_020 0.1115943707 - - PREDICTED: metal transporter Nramp3 [Jatropha curcas]
6 Hb_098993_010 0.1220459505 - - PREDICTED: chaperone protein dnaJ 72 isoform X2 [Jatropha curcas]
7 Hb_005227_070 0.1222712847 - - serine/threonine protein kinase, putative [Ricinus communis]
8 Hb_000427_030 0.1264498575 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000291_280 0.1316723815 - - PREDICTED: LOW QUALITY PROTEIN: myosin-11 [Jatropha curcas]
10 Hb_010174_130 0.1329440081 - - PREDICTED: regulator of G-protein signaling 1 [Jatropha curcas]
11 Hb_011174_070 0.1330385542 - - PREDICTED: pentatricopeptide repeat-containing protein At5g06540-like [Jatropha curcas]
12 Hb_000025_480 0.1333380684 transcription factor TF Family: HB PREDICTED: homeobox protein 10 isoform X1 [Jatropha curcas]
13 Hb_127003_010 0.134037962 - - PREDICTED: uncharacterized protein LOC105633613 [Jatropha curcas]
14 Hb_002450_050 0.1356639517 - - PREDICTED: geraniol 8-hydroxylase-like [Solanum lycopersicum]
15 Hb_001767_010 0.136129839 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
16 Hb_001001_160 0.1368505487 - - Phosphatidic acid phosphohydrolase 2 isoform 1 [Theobroma cacao]
17 Hb_001102_110 0.1372353396 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1-like [Jatropha curcas]
18 Hb_004156_060 0.1373367002 - - neutral/alkaline invertase 1 [Hevea brasiliensis]
19 Hb_002506_010 0.1374467173 - - choline transporter-related family protein [Populus trichocarpa]
20 Hb_000005_050 0.1381911104 - - PREDICTED: uncharacterized protein LOC105627993 [Jatropha curcas]

Gene co-expression network

sample Hb_000088_040 Hb_000088_040 Hb_176022_020 Hb_176022_020 Hb_000088_040--Hb_176022_020 Hb_000230_110 Hb_000230_110 Hb_000088_040--Hb_000230_110 Hb_003404_030 Hb_003404_030 Hb_000088_040--Hb_003404_030 Hb_012055_020 Hb_012055_020 Hb_000088_040--Hb_012055_020 Hb_098993_010 Hb_098993_010 Hb_000088_040--Hb_098993_010 Hb_005227_070 Hb_005227_070 Hb_000088_040--Hb_005227_070 Hb_176022_020--Hb_003404_030 Hb_019613_020 Hb_019613_020 Hb_176022_020--Hb_019613_020 Hb_176022_020--Hb_012055_020 Hb_040996_010 Hb_040996_010 Hb_176022_020--Hb_040996_010 Hb_000005_050 Hb_000005_050 Hb_176022_020--Hb_000005_050 Hb_000230_110--Hb_003404_030 Hb_000230_110--Hb_012055_020 Hb_000230_110--Hb_176022_020 Hb_006029_010 Hb_006029_010 Hb_000230_110--Hb_006029_010 Hb_004156_060 Hb_004156_060 Hb_000230_110--Hb_004156_060 Hb_000057_060 Hb_000057_060 Hb_003404_030--Hb_000057_060 Hb_002506_010 Hb_002506_010 Hb_003404_030--Hb_002506_010 Hb_127979_010 Hb_127979_010 Hb_003404_030--Hb_127979_010 Hb_009510_030 Hb_009510_030 Hb_003404_030--Hb_009510_030 Hb_010174_130 Hb_010174_130 Hb_003404_030--Hb_010174_130 Hb_012055_020--Hb_005227_070 Hb_000984_180 Hb_000984_180 Hb_012055_020--Hb_000984_180 Hb_034083_010 Hb_034083_010 Hb_012055_020--Hb_034083_010 Hb_073171_110 Hb_073171_110 Hb_012055_020--Hb_073171_110 Hb_003297_030 Hb_003297_030 Hb_098993_010--Hb_003297_030 Hb_007575_040 Hb_007575_040 Hb_098993_010--Hb_007575_040 Hb_000025_480 Hb_000025_480 Hb_098993_010--Hb_000025_480 Hb_007943_080 Hb_007943_080 Hb_098993_010--Hb_007943_080 Hb_185467_020 Hb_185467_020 Hb_098993_010--Hb_185467_020 Hb_007558_140 Hb_007558_140 Hb_098993_010--Hb_007558_140 Hb_005227_070--Hb_034083_010 Hb_000291_280 Hb_000291_280 Hb_005227_070--Hb_000291_280 Hb_002997_100 Hb_002997_100 Hb_005227_070--Hb_002997_100 Hb_005227_070--Hb_098993_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.8604 2.16938 1.41719 6.64999 32.1205 24.1333
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.9313 8.81844 34.9708 4.06683 2.80154

CAGE analysis