Hb_000088_050

Information

Type -
Description -
Location Contig88: 50087-63852
Sequence    

Annotation

kegg
ID pxb:103952560
description threonylcarbamoyladenosine tRNA methylthiotransferase-like
nr
ID XP_012075481.1
description PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase [Jatropha curcas]
swissprot
ID Q6NS26
description Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Xenopus laevis GN=cdkal1 PE=2 SV=1
trembl
ID A0A067KJB8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10950 PE=4 SV=1
Gene Ontology
ID GO:0005783
description threonylcarbamoyladenosine trna methylthiotransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61382: 50092-63836
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000088_050 0.0 - - PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase [Jatropha curcas]
2 Hb_001085_290 0.0581712843 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
3 Hb_085742_010 0.0615033572 - - hypothetical protein POPTR_0005s05170g [Populus trichocarpa]
4 Hb_000017_230 0.0761470998 - - hypothetical protein JCGZ_20558 [Jatropha curcas]
5 Hb_001377_350 0.0798968052 - - PREDICTED: exportin-2 [Jatropha curcas]
6 Hb_092000_010 0.0810133394 - - kelch repeat-containing F-box family protein [Populus trichocarpa]
7 Hb_001381_050 0.082170847 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Jatropha curcas]
8 Hb_012092_060 0.0865492683 - - PREDICTED: KH domain-containing protein At4g18375 [Jatropha curcas]
9 Hb_000003_100 0.0867680579 transcription factor TF Family: SNF2 PREDICTED: transcription termination factor 2 isoform X5 [Jatropha curcas]
10 Hb_011231_020 0.0868875387 - - PREDICTED: proline-, glutamic acid- and leucine-rich protein 1 isoform X2 [Jatropha curcas]
11 Hb_001552_030 0.0872433305 - - PREDICTED: galactoside 2-alpha-L-fucosyltransferase-like isoform X1 [Jatropha curcas]
12 Hb_012286_040 0.087791282 - - PREDICTED: pre-mRNA-splicing factor RSE1 [Jatropha curcas]
13 Hb_012539_060 0.0893397642 - - PREDICTED: protein EMBRYONIC FLOWER 1 [Jatropha curcas]
14 Hb_005563_060 0.0897741758 - - PREDICTED: coatomer subunit alpha-1 [Jatropha curcas]
15 Hb_007253_020 0.0906352818 - - PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]
16 Hb_002749_060 0.0925460483 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
17 Hb_000256_020 0.0932989254 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
18 Hb_001935_160 0.0950689279 - - PREDICTED: F-box protein At5g51370-like [Jatropha curcas]
19 Hb_002411_110 0.0970323939 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Jatropha curcas]
20 Hb_007062_030 0.0980091296 - - hypothetical protein VITISV_039033 [Vitis vinifera]

Gene co-expression network

sample Hb_000088_050 Hb_000088_050 Hb_001085_290 Hb_001085_290 Hb_000088_050--Hb_001085_290 Hb_085742_010 Hb_085742_010 Hb_000088_050--Hb_085742_010 Hb_000017_230 Hb_000017_230 Hb_000088_050--Hb_000017_230 Hb_001377_350 Hb_001377_350 Hb_000088_050--Hb_001377_350 Hb_092000_010 Hb_092000_010 Hb_000088_050--Hb_092000_010 Hb_001381_050 Hb_001381_050 Hb_000088_050--Hb_001381_050 Hb_001085_290--Hb_000017_230 Hb_002007_260 Hb_002007_260 Hb_001085_290--Hb_002007_260 Hb_001552_030 Hb_001552_030 Hb_001085_290--Hb_001552_030 Hb_060980_010 Hb_060980_010 Hb_001085_290--Hb_060980_010 Hb_001085_290--Hb_085742_010 Hb_000739_180 Hb_000739_180 Hb_085742_010--Hb_000739_180 Hb_000879_040 Hb_000879_040 Hb_085742_010--Hb_000879_040 Hb_085742_010--Hb_000017_230 Hb_085742_010--Hb_092000_010 Hb_121089_030 Hb_121089_030 Hb_000017_230--Hb_121089_030 Hb_021165_010 Hb_021165_010 Hb_000017_230--Hb_021165_010 Hb_000017_230--Hb_001552_030 Hb_000017_230--Hb_092000_010 Hb_000809_230 Hb_000809_230 Hb_001377_350--Hb_000809_230 Hb_002749_060 Hb_002749_060 Hb_001377_350--Hb_002749_060 Hb_002890_130 Hb_002890_130 Hb_001377_350--Hb_002890_130 Hb_000261_480 Hb_000261_480 Hb_001377_350--Hb_000261_480 Hb_003544_050 Hb_003544_050 Hb_001377_350--Hb_003544_050 Hb_000003_100 Hb_000003_100 Hb_001377_350--Hb_000003_100 Hb_002045_250 Hb_002045_250 Hb_092000_010--Hb_002045_250 Hb_001935_160 Hb_001935_160 Hb_092000_010--Hb_001935_160 Hb_092000_010--Hb_001085_290 Hb_007994_010 Hb_007994_010 Hb_001381_050--Hb_007994_010 Hb_001381_050--Hb_001085_290 Hb_005402_040 Hb_005402_040 Hb_001381_050--Hb_005402_040 Hb_000066_150 Hb_000066_150 Hb_001381_050--Hb_000066_150 Hb_001341_180 Hb_001341_180 Hb_001381_050--Hb_001341_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.53918 8.80849 8.99841 8.23489 4.00994 9.4066
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.00596 3.173 6.20945 10.7529 8.97553

CAGE analysis