Hb_000088_060

Information

Type -
Description -
Location Contig88: 68721-69726
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000088_060 0.0 - - -
2 Hb_006557_010 0.1746463946 - - -
3 Hb_001195_590 0.1879204403 - - PREDICTED: uncharacterized protein LOC105633753 [Jatropha curcas]
4 Hb_006735_040 0.2002885481 - - unnamed protein product [Vitis vinifera]
5 Hb_080083_010 0.2056354803 - - -
6 Hb_004092_010 0.213492575 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
7 Hb_005057_010 0.2137932977 - - -
8 Hb_004657_010 0.2151052239 - - PREDICTED: uncharacterized protein LOC105639764 [Jatropha curcas]
9 Hb_000525_040 0.2151144349 - - -
10 Hb_001454_390 0.2173732088 - - 8-kd dynein light chain, DLC8, pin [Thalassiosira pseudonana CCMP1335]
11 Hb_012662_010 0.2312706016 - - hypothetical protein JCGZ_06358 [Jatropha curcas]
12 Hb_001780_060 0.2319083396 - - PREDICTED: uncharacterized protein LOC105631129 [Jatropha curcas]
13 Hb_145761_010 0.2326328666 - - -
14 Hb_000753_260 0.2361179894 transcription factor TF Family: MIKC MADS-box transcription factor 3 [Hevea brasiliensis]
15 Hb_170116_010 0.2377033936 - - Geranyl diphosphate synthase 1 isoform 2 [Theobroma cacao]
16 Hb_005496_060 0.2395642623 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 38-like [Jatropha curcas]
17 Hb_002875_090 0.2398218531 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_089140_080 0.2410872797 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105637962 isoform X1 [Jatropha curcas]
19 Hb_003304_080 0.242588859 transcription factor TF Family: bHLH lMYC3 [Hevea brasiliensis]
20 Hb_000352_150 0.2428361139 - - hypothetical protein JCGZ_11641 [Jatropha curcas]

Gene co-expression network

sample Hb_000088_060 Hb_000088_060 Hb_006557_010 Hb_006557_010 Hb_000088_060--Hb_006557_010 Hb_001195_590 Hb_001195_590 Hb_000088_060--Hb_001195_590 Hb_006735_040 Hb_006735_040 Hb_000088_060--Hb_006735_040 Hb_080083_010 Hb_080083_010 Hb_000088_060--Hb_080083_010 Hb_004092_010 Hb_004092_010 Hb_000088_060--Hb_004092_010 Hb_005057_010 Hb_005057_010 Hb_000088_060--Hb_005057_010 Hb_004657_010 Hb_004657_010 Hb_006557_010--Hb_004657_010 Hb_005496_060 Hb_005496_060 Hb_006557_010--Hb_005496_060 Hb_000329_620 Hb_000329_620 Hb_006557_010--Hb_000329_620 Hb_004449_010 Hb_004449_010 Hb_006557_010--Hb_004449_010 Hb_002835_190 Hb_002835_190 Hb_006557_010--Hb_002835_190 Hb_000352_150 Hb_000352_150 Hb_006557_010--Hb_000352_150 Hb_001741_050 Hb_001741_050 Hb_001195_590--Hb_001741_050 Hb_005590_030 Hb_005590_030 Hb_001195_590--Hb_005590_030 Hb_001195_580 Hb_001195_580 Hb_001195_590--Hb_001195_580 Hb_001195_590--Hb_006557_010 Hb_089140_080 Hb_089140_080 Hb_001195_590--Hb_089140_080 Hb_003018_180 Hb_003018_180 Hb_006735_040--Hb_003018_180 Hb_000753_260 Hb_000753_260 Hb_006735_040--Hb_000753_260 Hb_001780_060 Hb_001780_060 Hb_006735_040--Hb_001780_060 Hb_000376_110 Hb_000376_110 Hb_006735_040--Hb_000376_110 Hb_009662_030 Hb_009662_030 Hb_006735_040--Hb_009662_030 Hb_005298_030 Hb_005298_030 Hb_006735_040--Hb_005298_030 Hb_080083_010--Hb_005057_010 Hb_000140_150 Hb_000140_150 Hb_080083_010--Hb_000140_150 Hb_000525_040 Hb_000525_040 Hb_080083_010--Hb_000525_040 Hb_027556_010 Hb_027556_010 Hb_080083_010--Hb_027556_010 Hb_017417_010 Hb_017417_010 Hb_080083_010--Hb_017417_010 Hb_004092_010--Hb_000525_040 Hb_010368_070 Hb_010368_070 Hb_004092_010--Hb_010368_070 Hb_011616_030 Hb_011616_030 Hb_004092_010--Hb_011616_030 Hb_004092_010--Hb_005057_010 Hb_095397_010 Hb_095397_010 Hb_004092_010--Hb_095397_010 Hb_001146_070 Hb_001146_070 Hb_004092_010--Hb_001146_070 Hb_005057_010--Hb_027556_010 Hb_005057_010--Hb_000140_150 Hb_005057_010--Hb_010368_070 Hb_011716_040 Hb_011716_040 Hb_005057_010--Hb_011716_040 Hb_005057_010--Hb_095397_010 Hb_005057_010--Hb_000525_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.07236 0.186449 0 0 5.83358 0.934955
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.62434 1.43048 0.488324 0 0

CAGE analysis