Hb_000088_170

Information

Type -
Description -
Location Contig88: 220867-234927
Sequence    

Annotation

kegg
ID rcu:RCOM_1334240
description hypothetical protein
nr
ID XP_012066809.1
description PREDICTED: ran-binding protein 10-like [Jatropha curcas]
swissprot
ID Q1LUS8
description Ran-binding protein 10 OS=Danio rerio GN=ranbp10 PE=3 SV=1
trembl
ID A0A067L1Q3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02453 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61386: 220940-234841
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000088_170 0.0 - - PREDICTED: ran-binding protein 10-like [Jatropha curcas]
2 Hb_000349_260 0.060486157 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
3 Hb_000637_110 0.0648867097 - - hypothetical protein B456_013G081300 [Gossypium raimondii]
4 Hb_005137_040 0.0649311258 - - hypothetical protein JCGZ_12324 [Jatropha curcas]
5 Hb_001473_160 0.0668867389 - - Vesicle-associated membrane protein, putative [Ricinus communis]
6 Hb_000856_040 0.0669419197 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105640470 [Jatropha curcas]
7 Hb_001408_140 0.0698530238 - - hypothetical protein JCGZ_00234 [Jatropha curcas]
8 Hb_000069_310 0.0732095617 - - ubiquitin ligase [Cucumis melo subsp. melo]
9 Hb_001511_060 0.0746897609 - - PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]
10 Hb_000460_080 0.0766631647 - - acyl-coenzyme A binding domain containing, putative [Ricinus communis]
11 Hb_002728_080 0.0778484691 - - WD-repeat protein, putative [Ricinus communis]
12 Hb_000072_120 0.079118698 - - serine/threonine protein kinase, putative [Ricinus communis]
13 Hb_001195_530 0.0791750433 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003058_260 0.079381186 - - hypothetical protein POPTR_0003s13040g [Populus trichocarpa]
15 Hb_007894_110 0.0797144561 - - Heat-shock protein 105 kDa, putative [Ricinus communis]
16 Hb_021419_030 0.0801756029 - - hypothetical protein glysoja_023295 [Glycine soja]
17 Hb_001679_050 0.0805479461 - - PREDICTED: exocyst complex component EXO84B [Jatropha curcas]
18 Hb_024621_040 0.081436041 transcription factor TF Family: ERF hypothetical protein L484_014666 [Morus notabilis]
19 Hb_093458_040 0.0830581502 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
20 Hb_000046_500 0.0832652016 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Jatropha curcas]

Gene co-expression network

sample Hb_000088_170 Hb_000088_170 Hb_000349_260 Hb_000349_260 Hb_000088_170--Hb_000349_260 Hb_000637_110 Hb_000637_110 Hb_000088_170--Hb_000637_110 Hb_005137_040 Hb_005137_040 Hb_000088_170--Hb_005137_040 Hb_001473_160 Hb_001473_160 Hb_000088_170--Hb_001473_160 Hb_000856_040 Hb_000856_040 Hb_000088_170--Hb_000856_040 Hb_001408_140 Hb_001408_140 Hb_000088_170--Hb_001408_140 Hb_000260_350 Hb_000260_350 Hb_000349_260--Hb_000260_350 Hb_000349_260--Hb_000637_110 Hb_001511_060 Hb_001511_060 Hb_000349_260--Hb_001511_060 Hb_000392_420 Hb_000392_420 Hb_000349_260--Hb_000392_420 Hb_000349_260--Hb_001473_160 Hb_000637_110--Hb_005137_040 Hb_000637_110--Hb_001473_160 Hb_000300_500 Hb_000300_500 Hb_000637_110--Hb_000300_500 Hb_006455_120 Hb_006455_120 Hb_000637_110--Hb_006455_120 Hb_005918_010 Hb_005918_010 Hb_005137_040--Hb_005918_010 Hb_012506_030 Hb_012506_030 Hb_005137_040--Hb_012506_030 Hb_105105_010 Hb_105105_010 Hb_005137_040--Hb_105105_010 Hb_000441_220 Hb_000441_220 Hb_005137_040--Hb_000441_220 Hb_000072_120 Hb_000072_120 Hb_001473_160--Hb_000072_120 Hb_000329_230 Hb_000329_230 Hb_001473_160--Hb_000329_230 Hb_002028_210 Hb_002028_210 Hb_001473_160--Hb_002028_210 Hb_003906_200 Hb_003906_200 Hb_001473_160--Hb_003906_200 Hb_093458_040 Hb_093458_040 Hb_001473_160--Hb_093458_040 Hb_002071_070 Hb_002071_070 Hb_000856_040--Hb_002071_070 Hb_001300_010 Hb_001300_010 Hb_000856_040--Hb_001300_010 Hb_003058_260 Hb_003058_260 Hb_000856_040--Hb_003058_260 Hb_012632_010 Hb_012632_010 Hb_000856_040--Hb_012632_010 Hb_000856_040--Hb_105105_010 Hb_004994_240 Hb_004994_240 Hb_000856_040--Hb_004994_240 Hb_001408_140--Hb_105105_010 Hb_001195_530 Hb_001195_530 Hb_001408_140--Hb_001195_530 Hb_003464_090 Hb_003464_090 Hb_001408_140--Hb_003464_090 Hb_021419_030 Hb_021419_030 Hb_001408_140--Hb_021419_030 Hb_001408_140--Hb_093458_040 Hb_000340_530 Hb_000340_530 Hb_001408_140--Hb_000340_530
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.5664 31.981 31.5746 40.1094 29.0386 19.4016
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.0234 24.4705 37.5864 29.0303 20.9999

CAGE analysis