Hb_000088_180

Information

Type -
Description -
Location Contig88: 236271-241439
Sequence    

Annotation

kegg
ID pop:POPTR_0009s05140g
description POPTRDRAFT_833234; ATP-dependent Clp protease ClpB family protein
nr
ID KDP34836.1
description hypothetical protein JCGZ_11198 [Jatropha curcas]
swissprot
ID Q889C2
description Chaperone protein ClpB OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=clpB PE=3 SV=1
trembl
ID A0A067KF38
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11198 PE=4 SV=1
Gene Ontology
ID GO:0005524
description atp-dependent clp protease family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61389: 238224-241054
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000088_180 0.0 - - hypothetical protein JCGZ_11198 [Jatropha curcas]
2 Hb_000320_440 0.0720448045 - - PREDICTED: tRNA wybutosine-synthesizing protein 2/3/4 isoform X1 [Jatropha curcas]
3 Hb_004032_460 0.0779774718 - - -
4 Hb_000260_700 0.0801487908 - - PREDICTED: cytochrome P450 89A2-like [Jatropha curcas]
5 Hb_000365_350 0.0824308281 - - PREDICTED: uncharacterized protein LOC105649068 [Jatropha curcas]
6 Hb_001776_080 0.0846811158 - - PREDICTED: CAX-interacting protein 4 [Jatropha curcas]
7 Hb_000173_370 0.0861983077 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
8 Hb_006478_070 0.088693326 - - PREDICTED: uncharacterized protein LOC105649957 [Jatropha curcas]
9 Hb_012807_120 0.0890009916 - - metal ion binding protein, putative [Ricinus communis]
10 Hb_002025_140 0.0900133449 - - PREDICTED: UBX domain-containing protein 2 isoform X1 [Jatropha curcas]
11 Hb_001016_060 0.0921470684 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005016_030 0.0943041055 - - hypothetical protein JCGZ_16549 [Jatropha curcas]
13 Hb_002149_040 0.0944026325 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001034_020 0.0944376601 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
15 Hb_160818_010 0.0958589499 - - -
16 Hb_006173_020 0.0963865507 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
17 Hb_000015_010 0.0968512674 - - -
18 Hb_000573_040 0.0969749732 - - hypothetical protein JCGZ_19524 [Jatropha curcas]
19 Hb_000491_080 0.0988666293 - - PREDICTED: F-box protein SKIP31 [Jatropha curcas]
20 Hb_000172_530 0.0991149919 - - PREDICTED: UBP1-associated protein 2B-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000088_180 Hb_000088_180 Hb_000320_440 Hb_000320_440 Hb_000088_180--Hb_000320_440 Hb_004032_460 Hb_004032_460 Hb_000088_180--Hb_004032_460 Hb_000260_700 Hb_000260_700 Hb_000088_180--Hb_000260_700 Hb_000365_350 Hb_000365_350 Hb_000088_180--Hb_000365_350 Hb_001776_080 Hb_001776_080 Hb_000088_180--Hb_001776_080 Hb_000173_370 Hb_000173_370 Hb_000088_180--Hb_000173_370 Hb_000320_440--Hb_001776_080 Hb_000172_530 Hb_000172_530 Hb_000320_440--Hb_000172_530 Hb_000320_440--Hb_000260_700 Hb_009615_110 Hb_009615_110 Hb_000320_440--Hb_009615_110 Hb_003777_220 Hb_003777_220 Hb_000320_440--Hb_003777_220 Hb_004032_460--Hb_000173_370 Hb_000300_540 Hb_000300_540 Hb_004032_460--Hb_000300_540 Hb_004032_460--Hb_000365_350 Hb_000849_150 Hb_000849_150 Hb_004032_460--Hb_000849_150 Hb_000363_340 Hb_000363_340 Hb_004032_460--Hb_000363_340 Hb_000260_700--Hb_000172_530 Hb_000260_700--Hb_001776_080 Hb_012654_020 Hb_012654_020 Hb_000260_700--Hb_012654_020 Hb_005016_030 Hb_005016_030 Hb_000260_700--Hb_005016_030 Hb_012807_120 Hb_012807_120 Hb_000365_350--Hb_012807_120 Hb_000050_120 Hb_000050_120 Hb_000365_350--Hb_000050_120 Hb_098315_100 Hb_098315_100 Hb_000365_350--Hb_098315_100 Hb_006478_070 Hb_006478_070 Hb_000365_350--Hb_006478_070 Hb_000176_140 Hb_000176_140 Hb_001776_080--Hb_000176_140 Hb_160818_010 Hb_160818_010 Hb_001776_080--Hb_160818_010 Hb_002149_040 Hb_002149_040 Hb_001776_080--Hb_002149_040 Hb_000179_250 Hb_000179_250 Hb_001776_080--Hb_000179_250 Hb_011316_030 Hb_011316_030 Hb_001776_080--Hb_011316_030 Hb_002025_140 Hb_002025_140 Hb_000173_370--Hb_002025_140 Hb_004531_090 Hb_004531_090 Hb_000173_370--Hb_004531_090 Hb_000573_040 Hb_000573_040 Hb_000173_370--Hb_000573_040 Hb_000173_210 Hb_000173_210 Hb_000173_370--Hb_000173_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
67.5448 11.6277 3.34984 4.30452 62.8656 57.0493
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.662 16.2457 17.443 5.85944 6.09589

CAGE analysis