Hb_000088_200

Information

Type transcription factor
Description TF Family: C2H2
Location Contig88: 270009-272706
Sequence    

Annotation

kegg
ID rcu:RCOM_1147820
description zinc finger protein, putative
nr
ID XP_002533583.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID P34694
description Transcription factor IIIA OS=Anaxyrus americanus GN=gtf3a PE=2 SV=1
trembl
ID B9T5R4
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_1147820 PE=4 SV=1
Gene Ontology
ID GO:0005730
description transcription factor iiia

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000088_200 0.0 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
2 Hb_004044_020 0.049691097 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
3 Hb_004525_100 0.058014754 - - hypothetical protein JCGZ_18418 [Jatropha curcas]
4 Hb_000236_280 0.0682004634 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
5 Hb_000072_140 0.0686052469 - - -
6 Hb_178968_100 0.0705512141 - - PREDICTED: putative glucose-6-phosphate 1-epimerase isoform X1 [Populus euphratica]
7 Hb_000175_390 0.0711683508 - - DNA-directed RNA polymerase III subunit F, putative [Ricinus communis]
8 Hb_003006_060 0.0773015833 - - PREDICTED: pre-mRNA-splicing factor syf2 [Jatropha curcas]
9 Hb_005237_060 0.079487264 transcription factor TF Family: ERF ERF/AP2 domain-containing transcription factor [Manihot esculenta]
10 Hb_000617_220 0.0797017696 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
11 Hb_003126_040 0.0841135482 - - conserved hypothetical protein [Ricinus communis]
12 Hb_073171_080 0.0842411108 - - PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X1 [Jatropha curcas]
13 Hb_003044_100 0.084869864 - - hypothetical protein F383_08446 [Gossypium arboreum]
14 Hb_003091_010 0.0856614903 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
15 Hb_000209_090 0.0896481125 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
16 Hb_001663_110 0.0899788907 - - RNA binding protein, putative [Ricinus communis]
17 Hb_004102_100 0.0914922619 - - PREDICTED: periodic tryptophan protein 2 homolog [Jatropha curcas]
18 Hb_171900_100 0.0916270078 - - PREDICTED: putative uncharacterized protein DDB_G0270496 [Jatropha curcas]
19 Hb_004450_060 0.0918579809 - - PREDICTED: uncharacterized protein LOC105638784 isoform X2 [Jatropha curcas]
20 Hb_011848_010 0.0922853311 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]

Gene co-expression network

sample Hb_000088_200 Hb_000088_200 Hb_004044_020 Hb_004044_020 Hb_000088_200--Hb_004044_020 Hb_004525_100 Hb_004525_100 Hb_000088_200--Hb_004525_100 Hb_000236_280 Hb_000236_280 Hb_000088_200--Hb_000236_280 Hb_000072_140 Hb_000072_140 Hb_000088_200--Hb_000072_140 Hb_178968_100 Hb_178968_100 Hb_000088_200--Hb_178968_100 Hb_000175_390 Hb_000175_390 Hb_000088_200--Hb_000175_390 Hb_000684_420 Hb_000684_420 Hb_004044_020--Hb_000684_420 Hb_004044_020--Hb_000236_280 Hb_031939_010 Hb_031939_010 Hb_004044_020--Hb_031939_010 Hb_012305_070 Hb_012305_070 Hb_004044_020--Hb_012305_070 Hb_004044_020--Hb_004525_100 Hb_004525_100--Hb_000236_280 Hb_000617_220 Hb_000617_220 Hb_004525_100--Hb_000617_220 Hb_000976_270 Hb_000976_270 Hb_004525_100--Hb_000976_270 Hb_003126_040 Hb_003126_040 Hb_004525_100--Hb_003126_040 Hb_004241_070 Hb_004241_070 Hb_000236_280--Hb_004241_070 Hb_000104_080 Hb_000104_080 Hb_000236_280--Hb_000104_080 Hb_073171_080 Hb_073171_080 Hb_000236_280--Hb_073171_080 Hb_000072_140--Hb_000617_220 Hb_011848_010 Hb_011848_010 Hb_000072_140--Hb_011848_010 Hb_000072_140--Hb_004044_020 Hb_003091_010 Hb_003091_010 Hb_000072_140--Hb_003091_010 Hb_000072_140--Hb_004525_100 Hb_004450_060 Hb_004450_060 Hb_178968_100--Hb_004450_060 Hb_007026_030 Hb_007026_030 Hb_178968_100--Hb_007026_030 Hb_000808_250 Hb_000808_250 Hb_178968_100--Hb_000808_250 Hb_003467_010 Hb_003467_010 Hb_178968_100--Hb_003467_010 Hb_006623_020 Hb_006623_020 Hb_178968_100--Hb_006623_020 Hb_004102_100 Hb_004102_100 Hb_000175_390--Hb_004102_100 Hb_009411_020 Hb_009411_020 Hb_000175_390--Hb_009411_020 Hb_000175_390--Hb_004044_020 Hb_007534_040 Hb_007534_040 Hb_000175_390--Hb_007534_040 Hb_000156_140 Hb_000156_140 Hb_000175_390--Hb_000156_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.6689 6.34982 7.7012 3.84595 21.3204 21.8697
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.13144 12.2788 6.29316 4.58228 5.25396

CAGE analysis