Hb_000088_220

Information

Type transcription factor
Description TF Family: zf-HD
Location Contig88: 282147-282869
Sequence    

Annotation

kegg
ID rcu:RCOM_0176600
description transcription factor, putative
nr
ID XP_002534484.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q9SB61
description Zinc-finger homeodomain protein 2 OS=Arabidopsis thaliana GN=ZHD1 PE=1 SV=1
trembl
ID B9T8B5
description Transcription factor, putative OS=Ricinus communis GN=RCOM_0176600 PE=4 SV=1
Gene Ontology
ID GO:0007275
description zinc-finger homeodomain protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61397: 282256-282991
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000088_220 0.0 transcription factor TF Family: zf-HD transcription factor, putative [Ricinus communis]
2 Hb_032264_080 0.2188251119 - - PREDICTED: uncharacterized protein LOC105648216 [Jatropha curcas]
3 Hb_000369_010 0.2195578444 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005725_200 0.2266709765 transcription factor TF Family: GRF hypothetical protein JCGZ_15989 [Jatropha curcas]
5 Hb_004342_020 0.2342926633 - - PREDICTED: serine/threonine-protein kinase Aurora-1 isoform X2 [Jatropha curcas]
6 Hb_006671_020 0.2414251435 - - hypothetical protein CISIN_1g0407181mg, partial [Citrus sinensis]
7 Hb_000120_250 0.2441889207 - - PREDICTED: uncharacterized protein LOC105630152 isoform X1 [Jatropha curcas]
8 Hb_000883_170 0.2470390345 - - senescence-associated family protein [Populus trichocarpa]
9 Hb_011671_170 0.2487983246 - - PREDICTED: protein DYAD [Jatropha curcas]
10 Hb_026549_020 0.2495922473 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_010080_010 0.2508128955 - - PREDICTED: uncharacterized protein LOC105635247 [Jatropha curcas]
12 Hb_000866_280 0.2542234662 - - PREDICTED: seven transmembrane domain-containing tyrosine-protein kinase 1-like [Jatropha curcas]
13 Hb_004800_250 0.2560312266 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
14 Hb_000098_030 0.2587017572 - - MLO-like protein 4 [Gossypium arboreum]
15 Hb_003994_130 0.2596784781 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1-like [Jatropha curcas]
16 Hb_029388_010 0.2602243663 transcription factor TF Family: C2C2-CO-like PREDICTED: zinc finger protein CONSTANS-LIKE 15-like [Jatropha curcas]
17 Hb_000002_120 0.2606192886 - - PREDICTED: uncharacterized protein LOC105782064 [Gossypium raimondii]
18 Hb_008725_060 0.2625737734 - - Protein COBRA precursor, putative [Ricinus communis]
19 Hb_001377_030 0.2627937047 - - PREDICTED: histone H3-like centromeric protein HTR12 [Jatropha curcas]
20 Hb_000340_130 0.265277633 - - PREDICTED: uncharacterized protein LOC105650033 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000088_220 Hb_000088_220 Hb_032264_080 Hb_032264_080 Hb_000088_220--Hb_032264_080 Hb_000369_010 Hb_000369_010 Hb_000088_220--Hb_000369_010 Hb_005725_200 Hb_005725_200 Hb_000088_220--Hb_005725_200 Hb_004342_020 Hb_004342_020 Hb_000088_220--Hb_004342_020 Hb_006671_020 Hb_006671_020 Hb_000088_220--Hb_006671_020 Hb_000120_250 Hb_000120_250 Hb_000088_220--Hb_000120_250 Hb_007592_020 Hb_007592_020 Hb_032264_080--Hb_007592_020 Hb_163839_010 Hb_163839_010 Hb_032264_080--Hb_163839_010 Hb_002631_320 Hb_002631_320 Hb_032264_080--Hb_002631_320 Hb_004724_220 Hb_004724_220 Hb_032264_080--Hb_004724_220 Hb_000187_030 Hb_000187_030 Hb_032264_080--Hb_000187_030 Hb_000340_130 Hb_000340_130 Hb_000369_010--Hb_000340_130 Hb_010080_010 Hb_010080_010 Hb_000369_010--Hb_010080_010 Hb_002284_210 Hb_002284_210 Hb_000369_010--Hb_002284_210 Hb_001277_280 Hb_001277_280 Hb_000369_010--Hb_001277_280 Hb_023765_020 Hb_023765_020 Hb_000369_010--Hb_023765_020 Hb_000959_220 Hb_000959_220 Hb_000369_010--Hb_000959_220 Hb_000679_120 Hb_000679_120 Hb_005725_200--Hb_000679_120 Hb_000321_080 Hb_000321_080 Hb_005725_200--Hb_000321_080 Hb_001946_350 Hb_001946_350 Hb_005725_200--Hb_001946_350 Hb_032208_020 Hb_032208_020 Hb_005725_200--Hb_032208_020 Hb_044662_050 Hb_044662_050 Hb_005725_200--Hb_044662_050 Hb_019715_010 Hb_019715_010 Hb_004342_020--Hb_019715_010 Hb_004342_020--Hb_001277_280 Hb_001377_030 Hb_001377_030 Hb_004342_020--Hb_001377_030 Hb_002450_040 Hb_002450_040 Hb_004342_020--Hb_002450_040 Hb_011249_030 Hb_011249_030 Hb_004342_020--Hb_011249_030 Hb_026549_020 Hb_026549_020 Hb_004342_020--Hb_026549_020 Hb_028071_010 Hb_028071_010 Hb_006671_020--Hb_028071_010 Hb_002950_090 Hb_002950_090 Hb_006671_020--Hb_002950_090 Hb_000922_420 Hb_000922_420 Hb_006671_020--Hb_000922_420 Hb_006671_020--Hb_005725_200 Hb_000866_280 Hb_000866_280 Hb_006671_020--Hb_000866_280 Hb_011671_310 Hb_011671_310 Hb_000120_250--Hb_011671_310 Hb_000120_250--Hb_010080_010 Hb_029388_010 Hb_029388_010 Hb_000120_250--Hb_029388_010 Hb_002311_480 Hb_002311_480 Hb_000120_250--Hb_002311_480 Hb_100790_010 Hb_100790_010 Hb_000120_250--Hb_100790_010 Hb_000979_060 Hb_000979_060 Hb_000120_250--Hb_000979_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.15437 0.530923 4.52751 0.617155 1.21116 0.17522
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.309468 1.27731 1.30706 1.55697 0.120766

CAGE analysis