Hb_000088_270

Information

Type -
Description -
Location Contig88: 352064-367485
Sequence    

Annotation

kegg
ID rcu:RCOM_0685890
description protein with unknown function
nr
ID XP_012075794.1
description PREDICTED: uncharacterized protein LOC105637003 [Jatropha curcas]
swissprot
ID Q8IYD8
description Fanconi anemia group M protein OS=Homo sapiens GN=FANCM PE=1 SV=2
trembl
ID A0A067KRB2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11177 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dead deah box rna helicase family isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61405: 354170-354765 , PASA_asmbl_61406: 355318-356560 , PASA_asmbl_61407: 362836-363189 , PASA_asmbl_61408: 363403-366924
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000088_270 0.0 - - PREDICTED: uncharacterized protein LOC105637003 [Jatropha curcas]
2 Hb_001019_050 0.0661382047 - - PREDICTED: importin-13 [Jatropha curcas]
3 Hb_011224_160 0.0674463203 transcription factor, rubber biosynthesis TF Family: HSF, Gene Name: Farnesyl diphosphate synthase PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
4 Hb_000347_450 0.0690977585 - - PREDICTED: tRNA(His) guanylyltransferase 1-like isoform X2 [Jatropha curcas]
5 Hb_000008_420 0.0725693238 - - PREDICTED: uncharacterized protein LOC105628103 isoform X1 [Jatropha curcas]
6 Hb_025336_020 0.0779537102 - - PREDICTED: PP2A regulatory subunit TAP46 [Jatropha curcas]
7 Hb_003777_290 0.0833280228 - - polypyrimidine tract binding protein, putative [Ricinus communis]
8 Hb_000363_190 0.0912807796 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like isoform X1 [Jatropha curcas]
9 Hb_007257_060 0.0922700741 - - PREDICTED: omega-amidase,chloroplastic [Jatropha curcas]
10 Hb_006588_060 0.0938753939 - - PREDICTED: DDB1- and CUL4-associated factor 13 [Jatropha curcas]
11 Hb_021576_010 0.0949676693 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
12 Hb_028960_030 0.094978839 - - Short-chain dehydrogenase-reductase B [Theobroma cacao]
13 Hb_012092_050 0.0955286447 - - PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]
14 Hb_107298_010 0.0956605977 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
15 Hb_006916_110 0.0958244669 - - PREDICTED: probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 isoform X2 [Jatropha curcas]
16 Hb_000979_220 0.098132714 - - PREDICTED: uncharacterized protein LOC105634085 isoform X1 [Jatropha curcas]
17 Hb_000787_200 0.0992209672 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_011674_040 0.0999481652 - - PREDICTED: uncharacterized protein LOC105648163 isoform X1 [Jatropha curcas]
19 Hb_050847_050 0.0999908614 - - PREDICTED: uncharacterized protein LOC105649140 isoform X1 [Jatropha curcas]
20 Hb_000510_340 0.1001580574 transcription factor TF Family: bZIP PREDICTED: light-inducible protein CPRF2 [Jatropha curcas]

Gene co-expression network

sample Hb_000088_270 Hb_000088_270 Hb_001019_050 Hb_001019_050 Hb_000088_270--Hb_001019_050 Hb_011224_160 Hb_011224_160 Hb_000088_270--Hb_011224_160 Hb_000347_450 Hb_000347_450 Hb_000088_270--Hb_000347_450 Hb_000008_420 Hb_000008_420 Hb_000088_270--Hb_000008_420 Hb_025336_020 Hb_025336_020 Hb_000088_270--Hb_025336_020 Hb_003777_290 Hb_003777_290 Hb_000088_270--Hb_003777_290 Hb_001019_050--Hb_025336_020 Hb_001019_050--Hb_000347_450 Hb_000159_120 Hb_000159_120 Hb_001019_050--Hb_000159_120 Hb_107298_010 Hb_107298_010 Hb_001019_050--Hb_107298_010 Hb_005489_140 Hb_005489_140 Hb_001019_050--Hb_005489_140 Hb_000510_340 Hb_000510_340 Hb_011224_160--Hb_000510_340 Hb_011224_160--Hb_000347_450 Hb_011224_160--Hb_003777_290 Hb_000363_190 Hb_000363_190 Hb_011224_160--Hb_000363_190 Hb_021576_010 Hb_021576_010 Hb_011224_160--Hb_021576_010 Hb_000684_040 Hb_000684_040 Hb_000347_450--Hb_000684_040 Hb_050847_050 Hb_050847_050 Hb_000347_450--Hb_050847_050 Hb_010775_040 Hb_010775_040 Hb_000347_450--Hb_010775_040 Hb_000183_090 Hb_000183_090 Hb_000347_450--Hb_000183_090 Hb_006588_060 Hb_006588_060 Hb_000008_420--Hb_006588_060 Hb_012092_050 Hb_012092_050 Hb_000008_420--Hb_012092_050 Hb_007257_060 Hb_007257_060 Hb_000008_420--Hb_007257_060 Hb_007423_050 Hb_007423_050 Hb_000008_420--Hb_007423_050 Hb_000920_300 Hb_000920_300 Hb_000008_420--Hb_000920_300 Hb_025336_020--Hb_007423_050 Hb_012022_080 Hb_012022_080 Hb_025336_020--Hb_012022_080 Hb_025336_020--Hb_000008_420 Hb_025336_020--Hb_005489_140 Hb_003777_290--Hb_021576_010 Hb_000979_220 Hb_000979_220 Hb_003777_290--Hb_000979_220 Hb_004096_110 Hb_004096_110 Hb_003777_290--Hb_004096_110 Hb_003777_290--Hb_000363_190 Hb_005489_040 Hb_005489_040 Hb_003777_290--Hb_005489_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.599654 1.63913 1.37328 1.51704 0.685257 0.772378
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.03786 1.4002 0.505088 2.52012 1.40914

CAGE analysis