Hb_000089_050

Information

Type -
Description -
Location Contig89: 31806-40671
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000089_050 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_015076_020 0.2236619503 - - IMP dehydrogenase/GMP reductase [Hevea brasiliensis]
3 Hb_105581_010 0.229804977 - - hypothetical protein, partial [Pseudomonas fluorescens]
4 Hb_008783_010 0.2443742124 - - -
5 Hb_009152_030 0.2603995429 - - hypothetical protein L484_026849 [Morus notabilis]
6 Hb_031866_030 0.2614155171 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis melo]
7 Hb_002060_040 0.2618392329 - - putative polyprotein [Oryza sativa Japonica Group]
8 Hb_033066_030 0.261883506 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
9 Hb_013420_040 0.262300763 - - unnamed protein product [Vitis vinifera]
10 Hb_097006_010 0.2723777877 - - PREDICTED: uncharacterized protein LOC105632410 [Jatropha curcas]
11 Hb_000505_120 0.2754448819 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
12 Hb_012184_030 0.2766745215 - - -
13 Hb_121041_010 0.2801424137 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
14 Hb_003413_010 0.2803750264 - - hypothetical protein, partial [Pseudomonas fluorescens]
15 Hb_075722_010 0.2857378436 - - hypothetical protein JCGZ_01984 [Jatropha curcas]
16 Hb_000463_030 0.2860313261 - - -
17 Hb_000009_010 0.2861462621 - - PREDICTED: ABC transporter G family member 10-like [Jatropha curcas]
18 Hb_000789_140 0.2897583655 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
19 Hb_006474_010 0.2906046226 - - hypothetical protein VITISV_032357 [Vitis vinifera]
20 Hb_158203_010 0.2973390652 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]

Gene co-expression network

sample Hb_000089_050 Hb_000089_050 Hb_015076_020 Hb_015076_020 Hb_000089_050--Hb_015076_020 Hb_105581_010 Hb_105581_010 Hb_000089_050--Hb_105581_010 Hb_008783_010 Hb_008783_010 Hb_000089_050--Hb_008783_010 Hb_009152_030 Hb_009152_030 Hb_000089_050--Hb_009152_030 Hb_031866_030 Hb_031866_030 Hb_000089_050--Hb_031866_030 Hb_002060_040 Hb_002060_040 Hb_000089_050--Hb_002060_040 Hb_000505_120 Hb_000505_120 Hb_015076_020--Hb_000505_120 Hb_015076_020--Hb_008783_010 Hb_010452_010 Hb_010452_010 Hb_015076_020--Hb_010452_010 Hb_011280_020 Hb_011280_020 Hb_015076_020--Hb_011280_020 Hb_015778_020 Hb_015778_020 Hb_015076_020--Hb_015778_020 Hb_004241_030 Hb_004241_030 Hb_015076_020--Hb_004241_030 Hb_000463_030 Hb_000463_030 Hb_105581_010--Hb_000463_030 Hb_004687_010 Hb_004687_010 Hb_105581_010--Hb_004687_010 Hb_012184_030 Hb_012184_030 Hb_105581_010--Hb_012184_030 Hb_148593_010 Hb_148593_010 Hb_105581_010--Hb_148593_010 Hb_017604_030 Hb_017604_030 Hb_105581_010--Hb_017604_030 Hb_008783_010--Hb_000505_120 Hb_008783_010--Hb_011280_020 Hb_097006_010 Hb_097006_010 Hb_008783_010--Hb_097006_010 Hb_010164_040 Hb_010164_040 Hb_008783_010--Hb_010164_040 Hb_008783_010--Hb_004241_030 Hb_009152_030--Hb_031866_030 Hb_009152_030--Hb_002060_040 Hb_033066_030 Hb_033066_030 Hb_009152_030--Hb_033066_030 Hb_000009_010 Hb_000009_010 Hb_009152_030--Hb_000009_010 Hb_000789_140 Hb_000789_140 Hb_009152_030--Hb_000789_140 Hb_001629_040 Hb_001629_040 Hb_009152_030--Hb_001629_040 Hb_031866_030--Hb_002060_040 Hb_031866_030--Hb_033066_030 Hb_031866_030--Hb_000009_010 Hb_031866_030--Hb_001629_040 Hb_031866_030--Hb_000789_140 Hb_002060_040--Hb_033066_030 Hb_002060_040--Hb_000009_010 Hb_002060_040--Hb_001629_040 Hb_002060_040--Hb_000789_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0140634 0.0046776 0 0 0 0.00496515
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00804085 0.0433645

CAGE analysis