Hb_000089_130

Information

Type -
Description -
Location Contig89: 96205-98646
Sequence    

Annotation

kegg
ID rcu:RCOM_0723320
description mitochondrial ribosomal protein S16, putative
nr
ID XP_002524864.1
description mitochondrial ribosomal protein S16, putative [Ricinus communis]
swissprot
ID B2ING0
description 30S ribosomal protein S16 OS=Streptococcus pneumoniae (strain CGSP14) GN=rpsP PE=3 SV=1
trembl
ID B9SFU5
description Mitochondrial ribosomal protein S16, putative OS=Ricinus communis GN=RCOM_0723320 PE=3 SV=1
Gene Ontology
ID GO:0005739
description 28s ribosomal protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61557: 96106-98510
cDNA
(Sanger)
(ID:Location)		 013_K23.ab1: 96183-98367 , 032_C13.ab1: 98240-98445

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000089_130 0.0 - - mitochondrial ribosomal protein S16, putative [Ricinus communis]
2 Hb_001454_330 0.0610227287 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
3 Hb_009026_050 0.0742421997 - - vacuolar ATPase F subunit [Hevea brasiliensis]
4 Hb_000563_590 0.0758624742 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
5 Hb_011139_020 0.0780032888 - - Mitochondrial import receptor subunit TOM7-1, putative [Ricinus communis]
6 Hb_000152_430 0.0820163388 - - PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]
7 Hb_001019_090 0.0843091942 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
8 Hb_011161_040 0.0867135955 - - PREDICTED: uncharacterized protein LOC105638905 isoform X2 [Jatropha curcas]
9 Hb_000831_060 0.0879574263 - - 17.5 kd heat shock family protein [Populus trichocarpa]
10 Hb_000417_110 0.0901365184 - - PREDICTED: uncharacterized protein LOC105649681 [Jatropha curcas]
11 Hb_007166_050 0.0923975808 - - -
12 Hb_000175_400 0.093143951 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002025_320 0.0931812817 - - PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Jatropha curcas]
14 Hb_000318_380 0.0942317023 - - PREDICTED: diphthamide biosynthesis protein 3-like [Jatropha curcas]
15 Hb_000479_180 0.0969777047 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001427_120 0.0971500387 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
17 Hb_000634_050 0.0986320025 - - PREDICTED: uncharacterized protein LOC105636623 [Jatropha curcas]
18 Hb_004297_100 0.0991989383 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
19 Hb_012515_010 0.1000681087 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
20 Hb_001804_040 0.1001274103 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000089_130 Hb_000089_130 Hb_001454_330 Hb_001454_330 Hb_000089_130--Hb_001454_330 Hb_009026_050 Hb_009026_050 Hb_000089_130--Hb_009026_050 Hb_000563_590 Hb_000563_590 Hb_000089_130--Hb_000563_590 Hb_011139_020 Hb_011139_020 Hb_000089_130--Hb_011139_020 Hb_000152_430 Hb_000152_430 Hb_000089_130--Hb_000152_430 Hb_001019_090 Hb_001019_090 Hb_000089_130--Hb_001019_090 Hb_001454_330--Hb_000563_590 Hb_000417_110 Hb_000417_110 Hb_001454_330--Hb_000417_110 Hb_001454_330--Hb_011139_020 Hb_001951_110 Hb_001951_110 Hb_001454_330--Hb_001951_110 Hb_001804_040 Hb_001804_040 Hb_001454_330--Hb_001804_040 Hb_025087_010 Hb_025087_010 Hb_009026_050--Hb_025087_010 Hb_001366_230 Hb_001366_230 Hb_009026_050--Hb_001366_230 Hb_000313_380 Hb_000313_380 Hb_009026_050--Hb_000313_380 Hb_002025_320 Hb_002025_320 Hb_009026_050--Hb_002025_320 Hb_183963_020 Hb_183963_020 Hb_009026_050--Hb_183963_020 Hb_001104_120 Hb_001104_120 Hb_000563_590--Hb_001104_120 Hb_000563_590--Hb_011139_020 Hb_001621_180 Hb_001621_180 Hb_000563_590--Hb_001621_180 Hb_000563_590--Hb_183963_020 Hb_011139_020--Hb_000152_430 Hb_012515_010 Hb_012515_010 Hb_011139_020--Hb_012515_010 Hb_025193_050 Hb_025193_050 Hb_011139_020--Hb_025193_050 Hb_024650_050 Hb_024650_050 Hb_011139_020--Hb_024650_050 Hb_004595_020 Hb_004595_020 Hb_011139_020--Hb_004595_020 Hb_001840_120 Hb_001840_120 Hb_011139_020--Hb_001840_120 Hb_000318_380 Hb_000318_380 Hb_000152_430--Hb_000318_380 Hb_000152_430--Hb_001019_090 Hb_000152_430--Hb_025193_050 Hb_000152_430--Hb_024650_050 Hb_000928_240 Hb_000928_240 Hb_000152_430--Hb_000928_240 Hb_004297_100 Hb_004297_100 Hb_001019_090--Hb_004297_100 Hb_007166_050 Hb_007166_050 Hb_001019_090--Hb_007166_050 Hb_000617_320 Hb_000617_320 Hb_001019_090--Hb_000617_320 Hb_001754_150 Hb_001754_150 Hb_001019_090--Hb_001754_150 Hb_000483_160 Hb_000483_160 Hb_001019_090--Hb_000483_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
219.908 54.1156 28.7118 36.6962 191.813 329.848
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
365.021 410.764 219.585 73.604 9.88836

CAGE analysis