Hb_000089_140

Information

Type -
Description -
Location Contig89: 98736-111969
Sequence    

Annotation

kegg
ID pop:POPTR_0013s13200g
description hypothetical protein
nr
ID XP_012075405.1
description PREDICTED: uncharacterized protein LOC105636682 isoform X2 [Jatropha curcas]
swissprot
ID Q9FN48
description Calcium sensing receptor, chloroplastic OS=Arabidopsis thaliana GN=CAS PE=1 SV=1
trembl
ID U5FSR7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s13200g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61560: 105249-105591 , PASA_asmbl_61563: 111306-111768
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000089_140 0.0 - - PREDICTED: uncharacterized protein LOC105636682 isoform X2 [Jatropha curcas]
2 Hb_000803_170 0.081713653 - - PREDICTED: uncharacterized protein LOC105648312 [Jatropha curcas]
3 Hb_000317_180 0.0831111772 - - PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Jatropha curcas]
4 Hb_002811_250 0.0997959964 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
5 Hb_000856_280 0.1022743695 - - PREDICTED: uncharacterized protein LOC105640491 [Jatropha curcas]
6 Hb_010557_010 0.1045596019 - - PREDICTED: 50S ribosomal protein L3, chloroplastic [Jatropha curcas]
7 Hb_058620_080 0.1049036448 - - PREDICTED: phosphoglycerate kinase, chloroplastic [Jatropha curcas]
8 Hb_000032_390 0.1125287739 - - PREDICTED: uncharacterized protein LOC105645663 [Jatropha curcas]
9 Hb_003605_060 0.115214716 - - PREDICTED: ATP synthase subunit delta, chloroplastic [Jatropha curcas]
10 Hb_002477_020 0.1153168776 - - PREDICTED: uncharacterized protein LOC105631402 [Jatropha curcas]
11 Hb_000045_050 0.1157858814 - - PREDICTED: probable zinc metalloprotease EGY2, chloroplastic [Jatropha curcas]
12 Hb_002485_050 0.1180187185 - - PREDICTED: probable plastid-lipid-associated protein 12, chloroplastic [Jatropha curcas]
13 Hb_000193_220 0.1184730972 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]
14 Hb_007803_040 0.1192781234 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic [Jatropha curcas]
15 Hb_134949_010 0.1206344024 - - PREDICTED: uncharacterized protein LOC105629574 [Jatropha curcas]
16 Hb_010098_040 0.1240711775 - - PREDICTED: DNA-binding protein SMUBP-2 [Jatropha curcas]
17 Hb_005181_120 0.1249980306 - - PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_009296_030 0.1255478409 - - PREDICTED: uncharacterized protein LOC105634328 [Jatropha curcas]
19 Hb_010721_020 0.1257254311 - - PREDICTED: photosynthetic NDH subunit of lumenal location 4, chloroplastic [Jatropha curcas]
20 Hb_000019_080 0.1263187528 transcription factor TF Family: bHLH PREDICTED: transcription factor ICE1 [Jatropha curcas]

Gene co-expression network

sample Hb_000089_140 Hb_000089_140 Hb_000803_170 Hb_000803_170 Hb_000089_140--Hb_000803_170 Hb_000317_180 Hb_000317_180 Hb_000089_140--Hb_000317_180 Hb_002811_250 Hb_002811_250 Hb_000089_140--Hb_002811_250 Hb_000856_280 Hb_000856_280 Hb_000089_140--Hb_000856_280 Hb_010557_010 Hb_010557_010 Hb_000089_140--Hb_010557_010 Hb_058620_080 Hb_058620_080 Hb_000089_140--Hb_058620_080 Hb_000803_170--Hb_002811_250 Hb_000803_170--Hb_010557_010 Hb_005563_040 Hb_005563_040 Hb_000803_170--Hb_005563_040 Hb_000193_220 Hb_000193_220 Hb_000803_170--Hb_000193_220 Hb_001579_280 Hb_001579_280 Hb_000803_170--Hb_001579_280 Hb_002477_020 Hb_002477_020 Hb_000317_180--Hb_002477_020 Hb_000029_330 Hb_000029_330 Hb_000317_180--Hb_000029_330 Hb_000317_180--Hb_000803_170 Hb_009296_030 Hb_009296_030 Hb_000317_180--Hb_009296_030 Hb_001266_160 Hb_001266_160 Hb_000317_180--Hb_001266_160 Hb_002811_250--Hb_000193_220 Hb_002811_250--Hb_010557_010 Hb_005181_120 Hb_005181_120 Hb_002811_250--Hb_005181_120 Hb_010098_040 Hb_010098_040 Hb_002811_250--Hb_010098_040 Hb_000679_080 Hb_000679_080 Hb_002811_250--Hb_000679_080 Hb_003605_060 Hb_003605_060 Hb_000856_280--Hb_003605_060 Hb_002485_050 Hb_002485_050 Hb_000856_280--Hb_002485_050 Hb_007803_040 Hb_007803_040 Hb_000856_280--Hb_007803_040 Hb_005523_040 Hb_005523_040 Hb_000856_280--Hb_005523_040 Hb_005210_010 Hb_005210_010 Hb_000856_280--Hb_005210_010 Hb_001195_290 Hb_001195_290 Hb_000856_280--Hb_001195_290 Hb_002411_100 Hb_002411_100 Hb_010557_010--Hb_002411_100 Hb_000703_070 Hb_000703_070 Hb_010557_010--Hb_000703_070 Hb_009393_130 Hb_009393_130 Hb_010557_010--Hb_009393_130 Hb_000045_050 Hb_000045_050 Hb_010557_010--Hb_000045_050 Hb_000544_080 Hb_000544_080 Hb_058620_080--Hb_000544_080 Hb_058620_080--Hb_009393_130 Hb_058620_080--Hb_010557_010 Hb_058620_080--Hb_000803_170 Hb_011519_050 Hb_011519_050 Hb_058620_080--Hb_011519_050 Hb_058620_080--Hb_007803_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.55274 5.44258 38.3916 15.8233 2.47116 1.91689
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.35762 3.64116 5.5845 2.53474 67.654

CAGE analysis