Hb_000089_170

Information

Type -
Description -
Location Contig89: 178790-180182
Sequence    

Annotation

kegg
ID pop:POPTR_0013s13230g
description hypothetical protein
nr
ID XP_011037360.1
description PREDICTED: uncharacterized protein LOC105134595 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9N5W9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s13230g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61568: 178891-180346 , PASA_asmbl_61569: 179258-179745
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000089_170 0.0 - - PREDICTED: uncharacterized protein LOC105134595 [Populus euphratica]
2 Hb_006711_030 0.0408194577 - - PREDICTED: rho guanine nucleotide exchange factor 8-like [Jatropha curcas]
3 Hb_167188_020 0.0414310903 - - PREDICTED: uncharacterized protein At1g05835 [Jatropha curcas]
4 Hb_002307_140 0.0564105334 transcription factor TF Family: AUX/IAA aux/IAA family protein [Populus trichocarpa]
5 Hb_007218_050 0.059229573 - - zinc finger protein, putative [Ricinus communis]
6 Hb_012675_040 0.0653321736 - - PREDICTED: uncharacterized protein LOC105647773 isoform X1 [Jatropha curcas]
7 Hb_132840_190 0.073475366 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
8 Hb_000840_080 0.0748231158 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 9 [Jatropha curcas]
9 Hb_002893_220 0.076792148 - - hypothetical protein B456_001G004300 [Gossypium raimondii]
10 Hb_000816_180 0.0800928375 - - PREDICTED: uncharacterized protein LOC105780682 [Gossypium raimondii]
11 Hb_002259_120 0.081506802 - - tonoplast intrinsic protein, putative [Ricinus communis]
12 Hb_180535_010 0.0838796972 - - -
13 Hb_007044_240 0.0858122621 - - PREDICTED: uncharacterized protein LOC105638704 isoform X1 [Jatropha curcas]
14 Hb_000739_010 0.0895291605 - - PREDICTED: serine carboxypeptidase II-3-like [Vitis vinifera]
15 Hb_007120_120 0.0908600008 - - protein binding protein, putative [Ricinus communis]
16 Hb_001646_030 0.0908703337 - - PREDICTED: ribonuclease 3-like protein 3 [Jatropha curcas]
17 Hb_000510_250 0.0922797115 transcription factor TF Family: AUX/IAA auxin-induced protein aux28 [Populus trichocarpa]
18 Hb_007576_090 0.093524073 - - lipid transfer protein precursor [Gossypium herbaceum subsp. africanum]
19 Hb_000556_060 0.0960040643 - - hypothetical protein OsJ_28181 [Oryza sativa Japonica Group]
20 Hb_000847_090 0.0960289356 - - PREDICTED: uncharacterized protein LOC105644263 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000089_170 Hb_000089_170 Hb_006711_030 Hb_006711_030 Hb_000089_170--Hb_006711_030 Hb_167188_020 Hb_167188_020 Hb_000089_170--Hb_167188_020 Hb_002307_140 Hb_002307_140 Hb_000089_170--Hb_002307_140 Hb_007218_050 Hb_007218_050 Hb_000089_170--Hb_007218_050 Hb_012675_040 Hb_012675_040 Hb_000089_170--Hb_012675_040 Hb_132840_190 Hb_132840_190 Hb_000089_170--Hb_132840_190 Hb_006711_030--Hb_002307_140 Hb_006711_030--Hb_167188_020 Hb_006711_030--Hb_007218_050 Hb_007044_240 Hb_007044_240 Hb_006711_030--Hb_007044_240 Hb_000840_080 Hb_000840_080 Hb_006711_030--Hb_000840_080 Hb_167188_020--Hb_012675_040 Hb_002259_120 Hb_002259_120 Hb_167188_020--Hb_002259_120 Hb_002893_220 Hb_002893_220 Hb_167188_020--Hb_002893_220 Hb_167188_020--Hb_002307_140 Hb_002307_140--Hb_007218_050 Hb_180535_010 Hb_180535_010 Hb_002307_140--Hb_180535_010 Hb_000816_180 Hb_000816_180 Hb_002307_140--Hb_000816_180 Hb_002307_140--Hb_007044_240 Hb_007576_090 Hb_007576_090 Hb_002307_140--Hb_007576_090 Hb_007218_050--Hb_180535_010 Hb_007218_050--Hb_000816_180 Hb_007218_050--Hb_007576_090 Hb_061336_010 Hb_061336_010 Hb_007218_050--Hb_061336_010 Hb_000739_010 Hb_000739_010 Hb_012675_040--Hb_000739_010 Hb_001646_030 Hb_001646_030 Hb_012675_040--Hb_001646_030 Hb_012675_040--Hb_002259_120 Hb_012807_040 Hb_012807_040 Hb_012675_040--Hb_012807_040 Hb_001300_190 Hb_001300_190 Hb_012675_040--Hb_001300_190 Hb_007221_020 Hb_007221_020 Hb_132840_190--Hb_007221_020 Hb_007922_030 Hb_007922_030 Hb_132840_190--Hb_007922_030 Hb_001652_100 Hb_001652_100 Hb_132840_190--Hb_001652_100 Hb_008021_060 Hb_008021_060 Hb_132840_190--Hb_008021_060 Hb_004453_160 Hb_004453_160 Hb_132840_190--Hb_004453_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 32.0967 16.3698 0 0.165696
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 13.301

CAGE analysis