Hb_000089_210

Information

Type -
Description -
Location Contig89: 240082-248622
Sequence    

Annotation

kegg
ID rcu:RCOM_0723010
description big map kinase/bmk, putative (EC:2.7.11.24)
nr
ID AFK49116.1
description unknown [Medicago truncatula]
swissprot
ID Q07176
description Mitogen-activated protein kinase homolog MMK1 OS=Medicago sativa GN=MMK1 PE=1 SV=1
trembl
ID I3T9C4
description Uncharacterized protein OS=Medicago truncatula PE=2 SV=1
Gene Ontology
ID GO:0005622
description mitogen-activated protein kinase homolog mmk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61573: 247501-247722
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000089_210 0.0 - - unknown [Medicago truncatula]
2 Hb_001699_010 0.0583115361 - - drought-inducible protein [Manihot esculenta]
3 Hb_000207_200 0.060623336 - - PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Jatropha curcas]
4 Hb_002909_040 0.0628675883 desease resistance Gene Name: AAA PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
5 Hb_005977_030 0.0631366052 - - PREDICTED: monothiol glutaredoxin-S10-like [Jatropha curcas]
6 Hb_004096_160 0.0678408201 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
7 Hb_003506_030 0.0705074812 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X2 [Jatropha curcas]
8 Hb_000476_060 0.0711337879 - - Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 [Theobroma cacao]
9 Hb_000085_170 0.0721019191 - - PREDICTED: transcription initiation factor TFIID subunit 6-like isoform X1 [Jatropha curcas]
10 Hb_000282_090 0.0721802638 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
11 Hb_002110_160 0.0728367335 - - PREDICTED: phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic [Jatropha curcas]
12 Hb_003470_040 0.0729771373 - - PREDICTED: 2-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial [Jatropha curcas]
13 Hb_000958_080 0.0735306395 - - conserved hypothetical protein [Ricinus communis]
14 Hb_043792_010 0.0748464213 - - PREDICTED: uncharacterized protein LOC105645113 isoform X2 [Jatropha curcas]
15 Hb_089839_010 0.0750853128 - - PREDICTED: probable xyloglucan glycosyltransferase 6 [Jatropha curcas]
16 Hb_001366_090 0.0785779115 transcription factor TF Family: NAC hypothetical protein RCOM_1341380 [Ricinus communis]
17 Hb_010287_020 0.0796354343 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
18 Hb_002413_010 0.0799008808 - - ABC transporter family protein [Hevea brasiliensis]
19 Hb_000352_350 0.0808682947 - - PREDICTED: monothiol glutaredoxin-S7, chloroplastic [Jatropha curcas]
20 Hb_002716_060 0.0810597298 - - carboxylesterase np, putative [Ricinus communis]

Gene co-expression network

sample Hb_000089_210 Hb_000089_210 Hb_001699_010 Hb_001699_010 Hb_000089_210--Hb_001699_010 Hb_000207_200 Hb_000207_200 Hb_000089_210--Hb_000207_200 Hb_002909_040 Hb_002909_040 Hb_000089_210--Hb_002909_040 Hb_005977_030 Hb_005977_030 Hb_000089_210--Hb_005977_030 Hb_004096_160 Hb_004096_160 Hb_000089_210--Hb_004096_160 Hb_003506_030 Hb_003506_030 Hb_000089_210--Hb_003506_030 Hb_010287_020 Hb_010287_020 Hb_001699_010--Hb_010287_020 Hb_004994_240 Hb_004994_240 Hb_001699_010--Hb_004994_240 Hb_000120_910 Hb_000120_910 Hb_001699_010--Hb_000120_910 Hb_000120_030 Hb_000120_030 Hb_001699_010--Hb_000120_030 Hb_000110_350 Hb_000110_350 Hb_001699_010--Hb_000110_350 Hb_003470_040 Hb_003470_040 Hb_000207_200--Hb_003470_040 Hb_000207_200--Hb_002909_040 Hb_033642_120 Hb_033642_120 Hb_000207_200--Hb_033642_120 Hb_029695_080 Hb_029695_080 Hb_000207_200--Hb_029695_080 Hb_002110_160 Hb_002110_160 Hb_000207_200--Hb_002110_160 Hb_002909_040--Hb_004096_160 Hb_000513_090 Hb_000513_090 Hb_002909_040--Hb_000513_090 Hb_009449_060 Hb_009449_060 Hb_002909_040--Hb_009449_060 Hb_002326_110 Hb_002326_110 Hb_002909_040--Hb_002326_110 Hb_001500_120 Hb_001500_120 Hb_005977_030--Hb_001500_120 Hb_005977_030--Hb_003470_040 Hb_000476_060 Hb_000476_060 Hb_005977_030--Hb_000476_060 Hb_004712_190 Hb_004712_190 Hb_005977_030--Hb_004712_190 Hb_011671_310 Hb_011671_310 Hb_005977_030--Hb_011671_310 Hb_000958_080 Hb_000958_080 Hb_004096_160--Hb_000958_080 Hb_004096_160--Hb_009449_060 Hb_161568_010 Hb_161568_010 Hb_004096_160--Hb_161568_010 Hb_000236_490 Hb_000236_490 Hb_004096_160--Hb_000236_490 Hb_016448_010 Hb_016448_010 Hb_003506_030--Hb_016448_010 Hb_003506_030--Hb_029695_080 Hb_087313_010 Hb_087313_010 Hb_003506_030--Hb_087313_010 Hb_004531_150 Hb_004531_150 Hb_003506_030--Hb_004531_150 Hb_003506_030--Hb_000958_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.5777 23.5897 37.0359 24.2415 13.9155 11.8858
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.3106 13.7687 12.4027 14.6415 16.4604

CAGE analysis