Hb_000089_230

Information

Type -
Description -
Location Contig89: 254777-265765
Sequence    

Annotation

kegg
ID pda:103718820
description uncharacterized LOC103718820
nr
ID XP_012448893.1
description PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0NGV1
description ATP-dependent zinc metalloprotease FtsH OS=Gossypium arboreum GN=F383_19049 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000089_230 0.0 - - PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
2 Hb_003384_050 0.0010855544 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_002805_080 0.0069873699 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
4 Hb_000105_090 0.0087466697 - - -
5 Hb_001631_120 0.0099982154 - - unnamed protein product [Vitis vinifera]
6 Hb_000705_310 0.0110106789 - - hypothetical protein POPTR_0001s03390g [Populus trichocarpa]
7 Hb_000290_010 0.0149992188 - - -
8 Hb_002307_060 0.0179707327 - - -
9 Hb_011781_050 0.0312857266 - - -
10 Hb_003494_250 0.0712343627 - - -
11 Hb_004021_110 0.0766188227 - - -
12 Hb_001217_030 0.1133820831 - - -
13 Hb_005357_190 0.1142412442 - - Protein COBRA precursor, putative [Ricinus communis]
14 Hb_003462_130 0.1347106482 - - -
15 Hb_003053_040 0.151770725 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
16 Hb_001486_110 0.1525538722 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-11-like [Jatropha curcas]
17 Hb_001032_040 0.1720655967 - - PREDICTED: psbP-like protein 1, chloroplastic [Jatropha curcas]
18 Hb_131621_010 0.2005708162 - - hypothetical protein MIMGU_mgv1a004274mg [Erythranthe guttata]
19 Hb_101393_010 0.2210938933 - - conserved hypothetical protein [Ricinus communis]
20 Hb_007765_090 0.2247263753 - - unknown [Glycine max]

Gene co-expression network

sample Hb_000089_230 Hb_000089_230 Hb_003384_050 Hb_003384_050 Hb_000089_230--Hb_003384_050 Hb_002805_080 Hb_002805_080 Hb_000089_230--Hb_002805_080 Hb_000105_090 Hb_000105_090 Hb_000089_230--Hb_000105_090 Hb_001631_120 Hb_001631_120 Hb_000089_230--Hb_001631_120 Hb_000705_310 Hb_000705_310 Hb_000089_230--Hb_000705_310 Hb_000290_010 Hb_000290_010 Hb_000089_230--Hb_000290_010 Hb_003384_050--Hb_002805_080 Hb_003384_050--Hb_000105_090 Hb_003384_050--Hb_001631_120 Hb_003384_050--Hb_000705_310 Hb_003384_050--Hb_000290_010 Hb_002805_080--Hb_000105_090 Hb_002805_080--Hb_001631_120 Hb_002805_080--Hb_000705_310 Hb_002805_080--Hb_000290_010 Hb_000105_090--Hb_001631_120 Hb_000105_090--Hb_000705_310 Hb_000105_090--Hb_000290_010 Hb_001631_120--Hb_000705_310 Hb_001631_120--Hb_000290_010 Hb_000705_310--Hb_000290_010 Hb_002307_060 Hb_002307_060 Hb_000290_010--Hb_002307_060 Hb_011781_050 Hb_011781_050 Hb_000290_010--Hb_011781_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0118304 0 0 0.013205
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis