Hb_000091_100

Information

Type -
Description -
Location Contig91: 289905-298536
Sequence    

Annotation

kegg
ID rcu:RCOM_1202350
description arginine biosynthesis protein argJ 1, putative (EC:2.3.1.35)
nr
ID XP_012074889.1
description PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID B9SZB6
description Arginine biosynthesis bifunctional protein ArgJ, chloroplastic OS=Ricinus communis GN=RCOM_1202350 PE=3 SV=1
trembl
ID A0A067DWL5
description Arginine biosynthesis bifunctional protein ArgJ, chloroplastic OS=Citrus sinensis GN=CISIN_1g012099mg PE=3 SV=1
Gene Ontology
ID GO:0009570
description arginine biosynthesis bifunctional protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000091_100 0.0 - - PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_080477_060 0.1100322026 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002260_020 0.1366674779 - - -
4 Hb_030954_020 0.1377479316 - - hypothetical protein RCOM_1330200 [Ricinus communis]
5 Hb_009659_020 0.1484748351 - - PREDICTED: uncharacterized protein LOC103870090 [Brassica rapa]
6 Hb_021056_010 0.1593706614 - - unnamed protein product [Vitis vinifera]
7 Hb_000567_280 0.1661759237 - - PREDICTED: uncharacterized protein At4g06598-like [Populus euphratica]
8 Hb_104010_010 0.1740605987 - - hypothetical protein JCGZ_26423 [Jatropha curcas]
9 Hb_000526_020 0.1762652735 - - thioredoxin-like family protein [Hevea brasiliensis]
10 Hb_003777_230 0.1817837526 - - PREDICTED: abscisic stress-ripening protein 1-like [Citrus sinensis]
11 Hb_001266_050 0.1822133631 - - PREDICTED: lipid phosphate phosphatase epsilon 2, chloroplastic-like isoform X2 [Elaeis guineensis]
12 Hb_003050_070 0.183915234 - - conserved hypothetical protein [Ricinus communis]
13 Hb_008887_040 0.1839305342 - - Ribonuclease P family protein / Rpp14 family protein isoform 1 [Theobroma cacao]
14 Hb_001741_090 0.1852036923 rubber biosynthesis Gene Name: SRPP1 RecName: Full=Small rubber particle protein; Short=SRPP; AltName: Full=22 kDa rubber particle protein; Short=22 kDa RPP; AltName: Full=27 kDa natural rubber allergen; AltName: Full=Latex allergen Hev b 3; AltName: Allergen=Hev b 3 [Hevea brasiliensis]
15 Hb_103752_010 0.1873306962 - - PREDICTED: uncharacterized protein At5g39865-like [Jatropha curcas]
16 Hb_023386_010 0.1901531563 - - PREDICTED: histidine triad nucleotide-binding protein 3 [Jatropha curcas]
17 Hb_000345_430 0.1923868893 - - 40S ribosomal protein S24A [Hevea brasiliensis]
18 Hb_007913_040 0.1939296668 - - sterol desaturase, putative [Ricinus communis]
19 Hb_002233_110 0.1950397644 - - PREDICTED: nuclear transcription factor Y subunit B-3-like [Jatropha curcas]
20 Hb_001623_430 0.1969938172 - - PREDICTED: small acidic protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000091_100 Hb_000091_100 Hb_080477_060 Hb_080477_060 Hb_000091_100--Hb_080477_060 Hb_002260_020 Hb_002260_020 Hb_000091_100--Hb_002260_020 Hb_030954_020 Hb_030954_020 Hb_000091_100--Hb_030954_020 Hb_009659_020 Hb_009659_020 Hb_000091_100--Hb_009659_020 Hb_021056_010 Hb_021056_010 Hb_000091_100--Hb_021056_010 Hb_000567_280 Hb_000567_280 Hb_000091_100--Hb_000567_280 Hb_080477_060--Hb_030954_020 Hb_080477_060--Hb_009659_020 Hb_080477_060--Hb_002260_020 Hb_001623_430 Hb_001623_430 Hb_080477_060--Hb_001623_430 Hb_007520_060 Hb_007520_060 Hb_080477_060--Hb_007520_060 Hb_008887_040 Hb_008887_040 Hb_002260_020--Hb_008887_040 Hb_168711_010 Hb_168711_010 Hb_002260_020--Hb_168711_010 Hb_008705_090 Hb_008705_090 Hb_002260_020--Hb_008705_090 Hb_003349_070 Hb_003349_070 Hb_002260_020--Hb_003349_070 Hb_002260_020--Hb_030954_020 Hb_030954_020--Hb_009659_020 Hb_030954_020--Hb_001623_430 Hb_183086_040 Hb_183086_040 Hb_030954_020--Hb_183086_040 Hb_030954_020--Hb_003349_070 Hb_000106_100 Hb_000106_100 Hb_030954_020--Hb_000106_100 Hb_009659_020--Hb_007520_060 Hb_000345_430 Hb_000345_430 Hb_009659_020--Hb_000345_430 Hb_009659_020--Hb_001623_430 Hb_000820_130 Hb_000820_130 Hb_009659_020--Hb_000820_130 Hb_021056_010--Hb_000820_130 Hb_021056_010--Hb_030954_020 Hb_021056_010--Hb_009659_020 Hb_000212_470 Hb_000212_470 Hb_021056_010--Hb_000212_470 Hb_001085_010 Hb_001085_010 Hb_021056_010--Hb_001085_010 Hb_000780_210 Hb_000780_210 Hb_021056_010--Hb_000780_210 Hb_003050_070 Hb_003050_070 Hb_000567_280--Hb_003050_070 Hb_159191_010 Hb_159191_010 Hb_000567_280--Hb_159191_010 Hb_104010_010 Hb_104010_010 Hb_000567_280--Hb_104010_010 Hb_001741_090 Hb_001741_090 Hb_000567_280--Hb_001741_090 Hb_002835_220 Hb_002835_220 Hb_000567_280--Hb_002835_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.61701 0.0593593 0.207953 1.60268 0.923043 3.25603
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.4068 7.60802 2.18082 0.443719 0.361665

CAGE analysis