Hb_000092_010

Information

Type transcription factor
Description TF Family: mTERF
Location Contig92: 14730-16484
Sequence    

Annotation

kegg
ID rcu:RCOM_0278030
description hypothetical protein
nr
ID XP_012087748.1
description PREDICTED: uncharacterized protein LOC105646502 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SWI6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0278030 PE=4 SV=1
Gene Ontology
ID GO:0005739
description mitochondrial transcription termination factor family isoform partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62353: 14723-15170
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000092_010 0.0 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646502 [Jatropha curcas]
2 Hb_000138_110 0.0580495239 - - PREDICTED: probable protein phosphatase 2C 68 [Jatropha curcas]
3 Hb_003976_030 0.0709773659 - - PREDICTED: probable phenylalanine--tRNA ligase beta subunit [Jatropha curcas]
4 Hb_007765_020 0.0882879873 - - hypothetical protein JCGZ_08545 [Jatropha curcas]
5 Hb_012325_020 0.0926482411 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
6 Hb_000723_130 0.093465491 desease resistance Gene Name: CDC48_N cell division cycle protein 48 [Hevea brasiliensis]
7 Hb_000723_200 0.0934732166 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]
8 Hb_000258_270 0.0940236251 - - PREDICTED: cullin-3A [Jatropha curcas]
9 Hb_004079_030 0.0948946189 - - PREDICTED: uncharacterized protein LOC105637701 isoform X2 [Jatropha curcas]
10 Hb_000011_330 0.0955837265 - - fyve finger-containing phosphoinositide kinase, fyv1, putative [Ricinus communis]
11 Hb_009178_030 0.0971991081 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005348_140 0.0978589147 - - PREDICTED: ubiquinone biosynthesis protein COQ9-B, mitochondrial [Jatropha curcas]
13 Hb_000063_140 0.1005705914 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Jatropha curcas]
14 Hb_007483_100 0.1009593691 - - hypothetical protein POPTR_0001s34330g [Populus trichocarpa]
15 Hb_085863_030 0.1013382285 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31430 [Jatropha curcas]
16 Hb_000096_010 0.1015032313 - - PREDICTED: U-box domain-containing protein 30-like [Citrus sinensis]
17 Hb_000086_400 0.1029162526 - - calmodulin binding protein, putative [Ricinus communis]
18 Hb_001617_050 0.1037164419 - - PREDICTED: uncharacterized protein LOC105649351 isoform X1 [Jatropha curcas]
19 Hb_006711_060 0.10462968 - - Tubulin beta-1 chain [Morus notabilis]
20 Hb_004052_090 0.1064030149 transcription factor TF Family: C3H PREDICTED: serine/arginine repetitive matrix protein 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000092_010 Hb_000092_010 Hb_000138_110 Hb_000138_110 Hb_000092_010--Hb_000138_110 Hb_003976_030 Hb_003976_030 Hb_000092_010--Hb_003976_030 Hb_007765_020 Hb_007765_020 Hb_000092_010--Hb_007765_020 Hb_012325_020 Hb_012325_020 Hb_000092_010--Hb_012325_020 Hb_000723_130 Hb_000723_130 Hb_000092_010--Hb_000723_130 Hb_000723_200 Hb_000723_200 Hb_000092_010--Hb_000723_200 Hb_004079_030 Hb_004079_030 Hb_000138_110--Hb_004079_030 Hb_000258_270 Hb_000258_270 Hb_000138_110--Hb_000258_270 Hb_000629_120 Hb_000629_120 Hb_000138_110--Hb_000629_120 Hb_000096_010 Hb_000096_010 Hb_000138_110--Hb_000096_010 Hb_002027_040 Hb_002027_040 Hb_000138_110--Hb_002027_040 Hb_003976_030--Hb_012325_020 Hb_000280_080 Hb_000280_080 Hb_003976_030--Hb_000280_080 Hb_000011_330 Hb_000011_330 Hb_003976_030--Hb_000011_330 Hb_005348_140 Hb_005348_140 Hb_003976_030--Hb_005348_140 Hb_001892_020 Hb_001892_020 Hb_003976_030--Hb_001892_020 Hb_007765_020--Hb_003976_030 Hb_001014_040 Hb_001014_040 Hb_007765_020--Hb_001014_040 Hb_007765_020--Hb_004079_030 Hb_001662_060 Hb_001662_060 Hb_007765_020--Hb_001662_060 Hb_005625_020 Hb_005625_020 Hb_007765_020--Hb_005625_020 Hb_001318_270 Hb_001318_270 Hb_012325_020--Hb_001318_270 Hb_001454_190 Hb_001454_190 Hb_012325_020--Hb_001454_190 Hb_000445_040 Hb_000445_040 Hb_012325_020--Hb_000445_040 Hb_001726_020 Hb_001726_020 Hb_012325_020--Hb_001726_020 Hb_001959_190 Hb_001959_190 Hb_012325_020--Hb_001959_190 Hb_002311_040 Hb_002311_040 Hb_000723_130--Hb_002311_040 Hb_006915_030 Hb_006915_030 Hb_000723_130--Hb_006915_030 Hb_000571_110 Hb_000571_110 Hb_000723_130--Hb_000571_110 Hb_009548_020 Hb_009548_020 Hb_000723_130--Hb_009548_020 Hb_002942_100 Hb_002942_100 Hb_000723_130--Hb_002942_100 Hb_000832_020 Hb_000832_020 Hb_000723_130--Hb_000832_020 Hb_000723_200--Hb_003976_030 Hb_000723_200--Hb_000571_110 Hb_000723_200--Hb_000723_130 Hb_006017_010 Hb_006017_010 Hb_000723_200--Hb_006017_010 Hb_004204_170 Hb_004204_170 Hb_000723_200--Hb_004204_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.7075 2.1671 2.11956 2.69185 2.16063 3.83926
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.6901 3.32892 8.61779 2.68511 2.16234

CAGE analysis