Hb_000092_020

Information

Type transcription factor
Description TF Family: MYB
Location Contig92: 17796-31950
Sequence    

Annotation

kegg
ID rcu:RCOM_0277900
description transcription factor, putative
nr
ID XP_002530352.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q8GUN5
description Protein PHR1-LIKE 1 OS=Arabidopsis thaliana GN=PHL1 PE=1 SV=1
trembl
ID B9SWI3
description Transcription factor, putative OS=Ricinus communis GN=RCOM_0277900 PE=4 SV=1
Gene Ontology
ID GO:0000166
description ubp1-associated protein 2c-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62355: 17963-23701
cDNA
(Sanger)
(ID:Location)		 020_D14.ab1: 18221-23760 , 044_N10.ab1: 18356-23741

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000092_020 0.0 transcription factor TF Family: MYB transcription factor, putative [Ricinus communis]
2 Hb_000395_130 0.0495089099 - - PREDICTED: N6-adenosine-methyltransferase MT-A70-like [Jatropha curcas]
3 Hb_001080_230 0.0518144971 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105649979 [Jatropha curcas]
4 Hb_000003_190 0.0521079939 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like isoform X1 [Nelumbo nucifera]
5 Hb_003785_040 0.0620323555 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
6 Hb_000574_540 0.0633355252 - - ATP binding protein, putative [Ricinus communis]
7 Hb_011491_010 0.063622075 - - Protein YME1, putative [Ricinus communis]
8 Hb_002872_040 0.0647012294 - - pumilio, putative [Ricinus communis]
9 Hb_001638_270 0.0668330267 - - PREDICTED: vacuolar protein sorting-associated protein 8 homolog isoform X2 [Jatropha curcas]
10 Hb_027760_080 0.0680825989 - - cytochrome P450, putative [Ricinus communis]
11 Hb_031527_020 0.070845789 - - PREDICTED: pre-mRNA-splicing factor 38B isoform X1 [Jatropha curcas]
12 Hb_000243_250 0.0708897952 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 44 [Jatropha curcas]
13 Hb_002890_290 0.0714611859 - - PREDICTED: outer envelope protein 64, mitochondrial [Jatropha curcas]
14 Hb_003470_080 0.0715114131 transcription factor TF Family: SNF2 PREDICTED: protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 [Jatropha curcas]
15 Hb_001227_030 0.0723489471 - - PREDICTED: transcription initiation factor TFIID subunit 2 isoform X1 [Jatropha curcas]
16 Hb_000264_030 0.0738980353 - - PREDICTED: splicing factor 3B subunit 2 [Jatropha curcas]
17 Hb_002078_220 0.0748031352 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X1 [Jatropha curcas]
18 Hb_000322_150 0.0750186285 transcription factor TF Family: TRAF PREDICTED: regulatory protein NPR1 isoform X1 [Jatropha curcas]
19 Hb_005779_080 0.0756269202 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
20 Hb_007054_060 0.0770058974 - - -

Gene co-expression network

sample Hb_000092_020 Hb_000092_020 Hb_000395_130 Hb_000395_130 Hb_000092_020--Hb_000395_130 Hb_001080_230 Hb_001080_230 Hb_000092_020--Hb_001080_230 Hb_000003_190 Hb_000003_190 Hb_000092_020--Hb_000003_190 Hb_003785_040 Hb_003785_040 Hb_000092_020--Hb_003785_040 Hb_000574_540 Hb_000574_540 Hb_000092_020--Hb_000574_540 Hb_011491_010 Hb_011491_010 Hb_000092_020--Hb_011491_010 Hb_000395_130--Hb_001080_230 Hb_000395_130--Hb_000003_190 Hb_000441_120 Hb_000441_120 Hb_000395_130--Hb_000441_120 Hb_006420_040 Hb_006420_040 Hb_000395_130--Hb_006420_040 Hb_012779_090 Hb_012779_090 Hb_000395_130--Hb_012779_090 Hb_001080_230--Hb_000003_190 Hb_003470_080 Hb_003470_080 Hb_001080_230--Hb_003470_080 Hb_002872_040 Hb_002872_040 Hb_001080_230--Hb_002872_040 Hb_003030_060 Hb_003030_060 Hb_001080_230--Hb_003030_060 Hb_000003_190--Hb_003470_080 Hb_000003_190--Hb_002872_040 Hb_008959_020 Hb_008959_020 Hb_000003_190--Hb_008959_020 Hb_002615_090 Hb_002615_090 Hb_003785_040--Hb_002615_090 Hb_031527_020 Hb_031527_020 Hb_003785_040--Hb_031527_020 Hb_004128_050 Hb_004128_050 Hb_003785_040--Hb_004128_050 Hb_009503_030 Hb_009503_030 Hb_003785_040--Hb_009503_030 Hb_003785_040--Hb_000395_130 Hb_001638_270 Hb_001638_270 Hb_000574_540--Hb_001638_270 Hb_000574_540--Hb_000003_190 Hb_000366_120 Hb_000366_120 Hb_000574_540--Hb_000366_120 Hb_000574_540--Hb_002872_040 Hb_000574_540--Hb_001080_230 Hb_001005_190 Hb_001005_190 Hb_011491_010--Hb_001005_190 Hb_001828_130 Hb_001828_130 Hb_011491_010--Hb_001828_130 Hb_007163_120 Hb_007163_120 Hb_011491_010--Hb_007163_120 Hb_000243_250 Hb_000243_250 Hb_011491_010--Hb_000243_250 Hb_001818_070 Hb_001818_070 Hb_011491_010--Hb_001818_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.20015 9.7179 4.52529 3.43113 6.68896 6.61423
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.34868 5.60562 4.3929 5.18773 4.48001

CAGE analysis