Hb_000092_100

Information

Type -
Description -
Location Contig92: 112377-121241
Sequence    

Annotation

kegg
ID tcc:TCM_024891
description Emsy N Terminus/ plant Tudor-like domains-containing protein isoform 1
nr
ID XP_012087754.1
description PREDICTED: protein EMSY-LIKE 1 [Jatropha curcas]
swissprot
ID F4K2F0
description Protein EMSY-LIKE 3 OS=Arabidopsis thaliana GN=EML3 PE=1 SV=1
trembl
ID A0A067JYK3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25530 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62369: 112409-121136 , PASA_asmbl_62370: 112409-120691
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000092_100 0.0 - - PREDICTED: protein EMSY-LIKE 1 [Jatropha curcas]
2 Hb_002495_040 0.0672316572 - - PREDICTED: chaperone protein dnaJ 6 isoform X1 [Jatropha curcas]
3 Hb_000465_430 0.0674462063 - - PREDICTED: uncharacterized protein LOC105632325 [Jatropha curcas]
4 Hb_001635_170 0.068641701 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
5 Hb_001936_080 0.073840561 - - PREDICTED: RNA-binding protein 48-like [Jatropha curcas]
6 Hb_096563_010 0.080105917 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Prunus mume]
7 Hb_003030_070 0.0809752092 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
8 Hb_004310_130 0.0809821932 - - PREDICTED: uncharacterized protein LOC105643225 [Jatropha curcas]
9 Hb_000059_330 0.0810892754 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
10 Hb_150360_030 0.0822581969 - - PREDICTED: F-box/WD-40 repeat-containing protein At3g52030-like [Jatropha curcas]
11 Hb_070739_010 0.0824851266 - - PREDICTED: probable aminotransferase ACS12 isoform X2 [Jatropha curcas]
12 Hb_000661_250 0.082724967 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
13 Hb_029920_050 0.0829092062 - - PREDICTED: putative HVA22-like protein g [Jatropha curcas]
14 Hb_001369_180 0.0833499793 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
15 Hb_011942_080 0.0834176079 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
16 Hb_086639_070 0.0844891814 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM2 [Jatropha curcas]
17 Hb_001358_030 0.0849140658 - - PREDICTED: 40S ribosomal protein S3-3-like [Populus euphratica]
18 Hb_008803_090 0.0850234729 - - PREDICTED: COP9 signalosome complex subunit 6a [Jatropha curcas]
19 Hb_000000_160 0.0858509478 - - PREDICTED: membrin-11 [Jatropha curcas]
20 Hb_000349_060 0.0869751504 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]

Gene co-expression network

sample Hb_000092_100 Hb_000092_100 Hb_002495_040 Hb_002495_040 Hb_000092_100--Hb_002495_040 Hb_000465_430 Hb_000465_430 Hb_000092_100--Hb_000465_430 Hb_001635_170 Hb_001635_170 Hb_000092_100--Hb_001635_170 Hb_001936_080 Hb_001936_080 Hb_000092_100--Hb_001936_080 Hb_096563_010 Hb_096563_010 Hb_000092_100--Hb_096563_010 Hb_003030_070 Hb_003030_070 Hb_000092_100--Hb_003030_070 Hb_002495_040--Hb_000465_430 Hb_002495_040--Hb_003030_070 Hb_001369_180 Hb_001369_180 Hb_002495_040--Hb_001369_180 Hb_012092_010 Hb_012092_010 Hb_002495_040--Hb_012092_010 Hb_002495_040--Hb_001936_080 Hb_000465_430--Hb_012092_010 Hb_003502_080 Hb_003502_080 Hb_000465_430--Hb_003502_080 Hb_033843_010 Hb_033843_010 Hb_000465_430--Hb_033843_010 Hb_005016_170 Hb_005016_170 Hb_000465_430--Hb_005016_170 Hb_000327_120 Hb_000327_120 Hb_001635_170--Hb_000327_120 Hb_010661_030 Hb_010661_030 Hb_001635_170--Hb_010661_030 Hb_008803_090 Hb_008803_090 Hb_001635_170--Hb_008803_090 Hb_033153_050 Hb_033153_050 Hb_001635_170--Hb_033153_050 Hb_000661_250 Hb_000661_250 Hb_001635_170--Hb_000661_250 Hb_022250_030 Hb_022250_030 Hb_001635_170--Hb_022250_030 Hb_003001_120 Hb_003001_120 Hb_001936_080--Hb_003001_120 Hb_028227_020 Hb_028227_020 Hb_001936_080--Hb_028227_020 Hb_009557_070 Hb_009557_070 Hb_001936_080--Hb_009557_070 Hb_001936_080--Hb_000465_430 Hb_001936_080--Hb_012092_010 Hb_096563_010--Hb_000661_250 Hb_003010_030 Hb_003010_030 Hb_096563_010--Hb_003010_030 Hb_001301_160 Hb_001301_160 Hb_096563_010--Hb_001301_160 Hb_001259_090 Hb_001259_090 Hb_096563_010--Hb_001259_090 Hb_000059_330 Hb_000059_330 Hb_096563_010--Hb_000059_330 Hb_000210_180 Hb_000210_180 Hb_096563_010--Hb_000210_180 Hb_003030_070--Hb_001369_180 Hb_003665_060 Hb_003665_060 Hb_003030_070--Hb_003665_060 Hb_000230_560 Hb_000230_560 Hb_003030_070--Hb_000230_560 Hb_007317_110 Hb_007317_110 Hb_003030_070--Hb_007317_110 Hb_002391_300 Hb_002391_300 Hb_003030_070--Hb_002391_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.0059 14.9435 14.9859 13.7208 19.5247 30.7609
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.9437 22.8593 12.9077 9.44722 6.65358

CAGE analysis