Hb_000092_160

Information

Type -
Description -
Location Contig92: 157336-157907
Sequence    

Annotation

kegg
ID pop:POPTR_0016s04570g
description hypothetical protein
nr
ID XP_011033219.1
description PREDICTED: 18 kDa seed maturation protein [Populus euphratica]
swissprot
ID Q01417
description 18 kDa seed maturation protein OS=Glycine max GN=GMPM1 PE=2 SV=1
trembl
ID U5FNP2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s04570g PE=4 SV=1
Gene Ontology
ID GO:0009790
description seed maturation protein lea 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62377: 157298-157855
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000092_160 0.0 - - PREDICTED: 18 kDa seed maturation protein [Populus euphratica]
2 Hb_001776_230 0.2586166639 - - PREDICTED: uncharacterized protein LOC104884260 [Beta vulgaris subsp. vulgaris]
3 Hb_000032_190 0.2810895596 - - -
4 Hb_000313_020 0.3061566536 - - Endoplasmic reticulum vesicle transporter protein isoform 2, partial [Theobroma cacao]
5 Hb_001205_010 0.3093969526 - - -
6 Hb_008725_160 0.3253785398 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002539_030 0.3462228504 - - PREDICTED: uncharacterized protein LOC105630961 [Jatropha curcas]
8 Hb_062827_010 0.3577759573 - - -
9 Hb_011692_030 0.360183393 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
10 Hb_020763_020 0.3602952436 - - hypothetical protein POPTR_0001s27010g [Populus trichocarpa]
11 Hb_003041_040 0.3657264234 - - PREDICTED: uncharacterized protein LOC104908276 [Beta vulgaris subsp. vulgaris]
12 Hb_004102_120 0.3695381836 - - -
13 Hb_003861_130 0.382075524 - - -
14 Hb_000307_120 0.3869410456 - - hypothetical protein B456_002G120900 [Gossypium raimondii]
15 Hb_002719_070 0.3903037866 - - gibberellin 20-oxidase, putative [Ricinus communis]
16 Hb_000574_500 0.3916692961 - - hypothetical protein JCGZ_06123 [Jatropha curcas]
17 Hb_004116_130 0.3941359831 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
18 Hb_001623_030 0.3955586848 - - serine/threonine protein kinase, putative [Ricinus communis]
19 Hb_015586_010 0.396756081 - - PREDICTED: flavonol sulfotransferase-like [Jatropha curcas]
20 Hb_002157_090 0.3981862944 - - hypothetical protein VITISV_041741 [Vitis vinifera]

Gene co-expression network

sample Hb_000092_160 Hb_000092_160 Hb_001776_230 Hb_001776_230 Hb_000092_160--Hb_001776_230 Hb_000032_190 Hb_000032_190 Hb_000092_160--Hb_000032_190 Hb_000313_020 Hb_000313_020 Hb_000092_160--Hb_000313_020 Hb_001205_010 Hb_001205_010 Hb_000092_160--Hb_001205_010 Hb_008725_160 Hb_008725_160 Hb_000092_160--Hb_008725_160 Hb_002539_030 Hb_002539_030 Hb_000092_160--Hb_002539_030 Hb_011609_160 Hb_011609_160 Hb_001776_230--Hb_011609_160 Hb_002719_070 Hb_002719_070 Hb_001776_230--Hb_002719_070 Hb_000307_120 Hb_000307_120 Hb_001776_230--Hb_000307_120 Hb_005045_050 Hb_005045_050 Hb_001776_230--Hb_005045_050 Hb_020259_020 Hb_020259_020 Hb_001776_230--Hb_020259_020 Hb_000032_190--Hb_002539_030 Hb_187620_010 Hb_187620_010 Hb_000032_190--Hb_187620_010 Hb_009683_050 Hb_009683_050 Hb_000032_190--Hb_009683_050 Hb_000656_180 Hb_000656_180 Hb_000032_190--Hb_000656_180 Hb_005248_020 Hb_005248_020 Hb_000032_190--Hb_005248_020 Hb_000313_020--Hb_001205_010 Hb_000313_020--Hb_008725_160 Hb_005686_070 Hb_005686_070 Hb_000313_020--Hb_005686_070 Hb_003041_040 Hb_003041_040 Hb_000313_020--Hb_003041_040 Hb_020763_020 Hb_020763_020 Hb_000313_020--Hb_020763_020 Hb_001205_010--Hb_008725_160 Hb_001205_010--Hb_005686_070 Hb_001205_010--Hb_003041_040 Hb_001205_010--Hb_020763_020 Hb_008725_160--Hb_005686_070 Hb_008725_160--Hb_002539_030 Hb_012019_040 Hb_012019_040 Hb_008725_160--Hb_012019_040 Hb_076223_020 Hb_076223_020 Hb_008725_160--Hb_076223_020 Hb_002539_030--Hb_076223_020 Hb_002539_030--Hb_012019_040 Hb_001878_020 Hb_001878_020 Hb_002539_030--Hb_001878_020 Hb_002982_030 Hb_002982_030 Hb_002539_030--Hb_002982_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.161528 0.0516517 0.0870431 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.293462 0 0 0 0

CAGE analysis