Hb_000092_170

Information

Type transcription factor
Description TF Family: C3H
Location Contig92: 158508-162205
Sequence    

Annotation

kegg
ID rcu:RCOM_0098170
description hypothetical protein
nr
ID XP_012087760.1
description PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
swissprot
ID Q7F8R0
description Zinc finger CCCH domain-containing protein 14 OS=Oryza sativa subsp. japonica GN=Os02g0194200 PE=2 SV=1
trembl
ID A0A067JYK9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25535 PE=4 SV=1
Gene Ontology
ID GO:0003723
description zinc finger ccch domain-containing protein 14-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62378: 158212-162125
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000092_170 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
2 Hb_003525_010 0.0530855375 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X1 [Populus euphratica]
3 Hb_044728_010 0.0546953052 - - -
4 Hb_000107_330 0.0638012439 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38150 [Jatropha curcas]
5 Hb_011485_070 0.0647721177 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
6 Hb_002078_350 0.0665975653 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
7 Hb_009767_110 0.0682064792 - - -
8 Hb_000215_110 0.0704838409 - - PREDICTED: uncharacterized protein C3F10.06c isoform X1 [Jatropha curcas]
9 Hb_004143_060 0.0715988264 - - DNA binding protein, putative [Ricinus communis]
10 Hb_002182_080 0.0722147299 - - 3-5 exonuclease, putative [Ricinus communis]
11 Hb_001638_170 0.0723084926 - - hypothetical protein Csa_3G118170 [Cucumis sativus]
12 Hb_001828_190 0.0731224504 - - PREDICTED: phosducin-like protein 3 [Prunus mume]
13 Hb_002835_080 0.0734400863 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic-like [Jatropha curcas]
14 Hb_000227_080 0.0734568095 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001279_150 0.0737392566 - - PREDICTED: ATP synthase mitochondrial F1 complex assembly factor 2 [Jatropha curcas]
16 Hb_000331_260 0.0742148103 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
17 Hb_058999_020 0.074907489 - - PREDICTED: mitochondrial outer membrane import complex protein METAXIN [Jatropha curcas]
18 Hb_019280_040 0.075157539 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_000120_460 0.0751653314 - - PREDICTED: thioredoxin reductase NTRB-like [Jatropha curcas]
20 Hb_000085_050 0.0753709473 - - PREDICTED: grpE protein homolog, mitochondrial isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000092_170 Hb_000092_170 Hb_003525_010 Hb_003525_010 Hb_000092_170--Hb_003525_010 Hb_044728_010 Hb_044728_010 Hb_000092_170--Hb_044728_010 Hb_000107_330 Hb_000107_330 Hb_000092_170--Hb_000107_330 Hb_011485_070 Hb_011485_070 Hb_000092_170--Hb_011485_070 Hb_002078_350 Hb_002078_350 Hb_000092_170--Hb_002078_350 Hb_009767_110 Hb_009767_110 Hb_000092_170--Hb_009767_110 Hb_000085_160 Hb_000085_160 Hb_003525_010--Hb_000085_160 Hb_000334_280 Hb_000334_280 Hb_003525_010--Hb_000334_280 Hb_000225_040 Hb_000225_040 Hb_003525_010--Hb_000225_040 Hb_003428_030 Hb_003428_030 Hb_003525_010--Hb_003428_030 Hb_000215_110 Hb_000215_110 Hb_003525_010--Hb_000215_110 Hb_044728_010--Hb_009767_110 Hb_044728_010--Hb_000107_330 Hb_044728_010--Hb_000225_040 Hb_001675_180 Hb_001675_180 Hb_044728_010--Hb_001675_180 Hb_010618_010 Hb_010618_010 Hb_044728_010--Hb_010618_010 Hb_000107_330--Hb_009767_110 Hb_000085_050 Hb_000085_050 Hb_000107_330--Hb_000085_050 Hb_000107_330--Hb_003525_010 Hb_000025_640 Hb_000025_640 Hb_000107_330--Hb_000025_640 Hb_000185_040 Hb_000185_040 Hb_011485_070--Hb_000185_040 Hb_001341_170 Hb_001341_170 Hb_011485_070--Hb_001341_170 Hb_004032_150 Hb_004032_150 Hb_011485_070--Hb_004032_150 Hb_002481_080 Hb_002481_080 Hb_011485_070--Hb_002481_080 Hb_002675_070 Hb_002675_070 Hb_011485_070--Hb_002675_070 Hb_011386_010 Hb_011386_010 Hb_002078_350--Hb_011386_010 Hb_156279_020 Hb_156279_020 Hb_002078_350--Hb_156279_020 Hb_000373_070 Hb_000373_070 Hb_002078_350--Hb_000373_070 Hb_006831_140 Hb_006831_140 Hb_002078_350--Hb_006831_140 Hb_001470_030 Hb_001470_030 Hb_002078_350--Hb_001470_030 Hb_000035_180 Hb_000035_180 Hb_002078_350--Hb_000035_180 Hb_006649_050 Hb_006649_050 Hb_009767_110--Hb_006649_050 Hb_001198_100 Hb_001198_100 Hb_009767_110--Hb_001198_100 Hb_002725_120 Hb_002725_120 Hb_009767_110--Hb_002725_120 Hb_008554_130 Hb_008554_130 Hb_009767_110--Hb_008554_130 Hb_000684_470 Hb_000684_470 Hb_009767_110--Hb_000684_470
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.4255 16.9714 11.8239 19.1947 22.8327 34.0139
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.3271 33.8193 26.9328 23.8498 20.4164

CAGE analysis