Hb_000093_110

Information

Type -
Description -
Location Contig93: 148822-152456
Sequence    

Annotation

kegg
ID vvi:100250986
description cytochrome b5 isoform A
nr
ID XP_012067812.1
description PREDICTED: cytochrome b5 isoform A [Jatropha curcas]
swissprot
ID Q9FDW8
description Cytochrome b5 isoform A OS=Arabidopsis thaliana GN=CB5-A PE=1 SV=1
trembl
ID A0A067KYQ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15733 PE=3 SV=1
Gene Ontology
ID GO:0020037
description cytochrome b5 isoform a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62817: 148910-152407
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000093_110 0.0 - - PREDICTED: cytochrome b5 isoform A [Jatropha curcas]
2 Hb_000735_040 0.0573912132 - - 60S ribosomal protein L32A [Hevea brasiliensis]
3 Hb_002588_010 0.0648975066 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
4 Hb_006478_160 0.0705502083 - - 20S proteasome beta subunit D1 [Hevea brasiliensis]
5 Hb_000645_140 0.0714245941 - - PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Nelumbo nucifera]
6 Hb_000567_410 0.0719002835 - - hypothetical protein JCGZ_12784 [Jatropha curcas]
7 Hb_174865_010 0.074159569 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
8 Hb_000317_070 0.0764483738 - - PREDICTED: uncharacterized protein LOC103942205 isoform X2 [Pyrus x bretschneideri]
9 Hb_000062_390 0.0782637625 - - PREDICTED: protein Iojap-related, mitochondrial [Jatropha curcas]
10 Hb_000676_160 0.0817171356 - - folate carrier protein, putative [Ricinus communis]
11 Hb_000042_260 0.0839019379 - - PREDICTED: uncharacterized protein LOC105632814 [Jatropha curcas]
12 Hb_008921_020 0.087766704 - - PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Jatropha curcas]
13 Hb_002006_130 0.08783089 - - PREDICTED: uncharacterized protein LOC105648712 [Jatropha curcas]
14 Hb_001085_270 0.0879044473 - - 60S ribosomal protein L13aA [Hevea brasiliensis]
15 Hb_019516_100 0.088616326 - - 40S ribosomal protein S14, putative [Ricinus communis]
16 Hb_000062_650 0.0894909003 - - PREDICTED: uncharacterized protein LOC105628245 [Jatropha curcas]
17 Hb_000111_340 0.0914802895 - - peptidyl-prolyl cis-trans isomerase h, ppih, putative [Ricinus communis]
18 Hb_001141_140 0.0920133476 - - 20S proteasome beta subunit D3 [Hevea brasiliensis]
19 Hb_000906_040 0.0923510135 - - PREDICTED: polynucleotide 5'-hydroxyl-kinase nol9 isoform X1 [Jatropha curcas]
20 Hb_002235_080 0.0938007535 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3 [Vitis vinifera]

Gene co-expression network

sample Hb_000093_110 Hb_000093_110 Hb_000735_040 Hb_000735_040 Hb_000093_110--Hb_000735_040 Hb_002588_010 Hb_002588_010 Hb_000093_110--Hb_002588_010 Hb_006478_160 Hb_006478_160 Hb_000093_110--Hb_006478_160 Hb_000645_140 Hb_000645_140 Hb_000093_110--Hb_000645_140 Hb_000567_410 Hb_000567_410 Hb_000093_110--Hb_000567_410 Hb_174865_010 Hb_174865_010 Hb_000093_110--Hb_174865_010 Hb_000735_040--Hb_174865_010 Hb_000506_070 Hb_000506_070 Hb_000735_040--Hb_000506_070 Hb_001141_140 Hb_001141_140 Hb_000735_040--Hb_001141_140 Hb_008921_020 Hb_008921_020 Hb_000735_040--Hb_008921_020 Hb_003018_020 Hb_003018_020 Hb_000735_040--Hb_003018_020 Hb_000042_260 Hb_000042_260 Hb_002588_010--Hb_000042_260 Hb_011311_010 Hb_011311_010 Hb_002588_010--Hb_011311_010 Hb_019516_100 Hb_019516_100 Hb_002588_010--Hb_019516_100 Hb_007944_040 Hb_007944_040 Hb_002588_010--Hb_007944_040 Hb_000111_340 Hb_000111_340 Hb_002588_010--Hb_000111_340 Hb_006478_160--Hb_000567_410 Hb_000731_190 Hb_000731_190 Hb_006478_160--Hb_000731_190 Hb_006478_160--Hb_000735_040 Hb_000788_010 Hb_000788_010 Hb_006478_160--Hb_000788_010 Hb_006478_160--Hb_008921_020 Hb_008948_050 Hb_008948_050 Hb_000645_140--Hb_008948_050 Hb_000645_140--Hb_002588_010 Hb_000062_390 Hb_000062_390 Hb_000645_140--Hb_000062_390 Hb_000645_140--Hb_000567_410 Hb_000645_140--Hb_019516_100 Hb_001085_270 Hb_001085_270 Hb_000567_410--Hb_001085_270 Hb_001085_120 Hb_001085_120 Hb_000567_410--Hb_001085_120 Hb_002811_080 Hb_002811_080 Hb_000567_410--Hb_002811_080 Hb_005063_050 Hb_005063_050 Hb_000567_410--Hb_005063_050 Hb_000676_160 Hb_000676_160 Hb_174865_010--Hb_000676_160 Hb_179296_010 Hb_179296_010 Hb_174865_010--Hb_179296_010 Hb_174865_010--Hb_003018_020 Hb_000317_070 Hb_000317_070 Hb_174865_010--Hb_000317_070 Hb_007441_300 Hb_007441_300 Hb_174865_010--Hb_007441_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.3852 14.2415 24.1566 22.2721 13.8731 16.8896
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
52.4471 122.93 33.9452 21.6248 18.742

CAGE analysis