Hb_000093_160

Information

Type -
Description -
Location Contig93: 187156-191289
Sequence    

Annotation

kegg
ID rcu:RCOM_1069020
description ccaat-binding transcription factor subunit A, putative
nr
ID XP_012073719.1
description PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 [Jatropha curcas]
swissprot
ID Q8VYK4
description Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana GN=NFYB8 PE=2 SV=1
trembl
ID A0A067LFV2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06664 PE=4 SV=1
Gene Ontology
ID GO:0046982
description nuclear transcription factor y subunit b-1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62825: 187159-191380
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000093_160 0.0 - - PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 [Jatropha curcas]
2 Hb_003010_030 0.0521767401 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
3 Hb_003428_030 0.0586368371 - - tRNA, putative [Ricinus communis]
4 Hb_096563_010 0.059238169 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Prunus mume]
5 Hb_004310_150 0.0602301738 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
6 Hb_000120_790 0.0618558387 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
7 Hb_001258_090 0.0626602621 - - PREDICTED: protein spt2-like [Jatropha curcas]
8 Hb_003125_120 0.0640664788 - - PREDICTED: TITAN-like protein [Jatropha curcas]
9 Hb_120410_010 0.0643263841 - - PREDICTED: vesicle-associated membrane protein 727-like [Solanum tuberosum]
10 Hb_004116_060 0.0694209519 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
11 Hb_003525_010 0.0696076614 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X1 [Populus euphratica]
12 Hb_156973_010 0.0700718425 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003929_250 0.0701012732 - - PREDICTED: proteasome assembly chaperone 4 [Jatropha curcas]
14 Hb_000038_170 0.0718135098 - - PREDICTED: SCY1-like protein 2 [Jatropha curcas]
15 Hb_002739_050 0.0731372766 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X2 [Jatropha curcas]
16 Hb_023386_020 0.0731946134 - - PREDICTED: chaperone protein dnaJ 13 isoform X2 [Jatropha curcas]
17 Hb_000334_280 0.0739107159 - - PREDICTED: protein FRA10AC1 [Jatropha curcas]
18 Hb_036790_100 0.074165338 - - PREDICTED: uncharacterized protein LOC105645120 [Jatropha curcas]
19 Hb_003030_070 0.0748462671 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
20 Hb_001358_030 0.0750148182 - - PREDICTED: 40S ribosomal protein S3-3-like [Populus euphratica]

Gene co-expression network

sample Hb_000093_160 Hb_000093_160 Hb_003010_030 Hb_003010_030 Hb_000093_160--Hb_003010_030 Hb_003428_030 Hb_003428_030 Hb_000093_160--Hb_003428_030 Hb_096563_010 Hb_096563_010 Hb_000093_160--Hb_096563_010 Hb_004310_150 Hb_004310_150 Hb_000093_160--Hb_004310_150 Hb_000120_790 Hb_000120_790 Hb_000093_160--Hb_000120_790 Hb_001258_090 Hb_001258_090 Hb_000093_160--Hb_001258_090 Hb_003010_030--Hb_096563_010 Hb_012008_020 Hb_012008_020 Hb_003010_030--Hb_012008_020 Hb_003010_030--Hb_001258_090 Hb_003010_030--Hb_000120_790 Hb_000089_220 Hb_000089_220 Hb_003010_030--Hb_000089_220 Hb_007691_030 Hb_007691_030 Hb_003428_030--Hb_007691_030 Hb_003525_010 Hb_003525_010 Hb_003428_030--Hb_003525_010 Hb_000038_170 Hb_000038_170 Hb_003428_030--Hb_000038_170 Hb_003125_120 Hb_003125_120 Hb_003428_030--Hb_003125_120 Hb_000032_270 Hb_000032_270 Hb_003428_030--Hb_000032_270 Hb_000661_250 Hb_000661_250 Hb_096563_010--Hb_000661_250 Hb_001301_160 Hb_001301_160 Hb_096563_010--Hb_001301_160 Hb_001259_090 Hb_001259_090 Hb_096563_010--Hb_001259_090 Hb_000059_330 Hb_000059_330 Hb_096563_010--Hb_000059_330 Hb_000210_180 Hb_000210_180 Hb_096563_010--Hb_000210_180 Hb_002518_280 Hb_002518_280 Hb_004310_150--Hb_002518_280 Hb_000152_380 Hb_000152_380 Hb_004310_150--Hb_000152_380 Hb_004032_430 Hb_004032_430 Hb_004310_150--Hb_004032_430 Hb_120410_010 Hb_120410_010 Hb_004310_150--Hb_120410_010 Hb_002477_280 Hb_002477_280 Hb_004310_150--Hb_002477_280 Hb_000342_130 Hb_000342_130 Hb_000120_790--Hb_000342_130 Hb_000120_790--Hb_007691_030 Hb_001776_140 Hb_001776_140 Hb_000120_790--Hb_001776_140 Hb_001006_140 Hb_001006_140 Hb_000120_790--Hb_001006_140 Hb_001595_030 Hb_001595_030 Hb_001258_090--Hb_001595_030 Hb_001258_090--Hb_000038_170 Hb_023386_020 Hb_023386_020 Hb_001258_090--Hb_023386_020 Hb_007054_060 Hb_007054_060 Hb_001258_090--Hb_007054_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.959 8.78543 8.3925 8.61792 13.1088 16.829
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.7885 18.0885 8.53281 7.65215 7.79228

CAGE analysis