Hb_000094_010

Information

Type -
Description -
Location Contig94: 16092-21498
Sequence    

Annotation

kegg
ID rcu:RCOM_1594390
description lrr receptor protein kinase, putative (EC:1.3.1.74)
nr
ID XP_002510390.1
description lrr receptor protein kinase, putative [Ricinus communis]
swissprot
ID C0LGK4
description Probable LRR receptor-like serine/threonine-protein kinase At2g16250 OS=Arabidopsis thaliana GN=At2g16250 PE=2 SV=1
trembl
ID B9R7U7
description Lrr receptor protein kinase, putative OS=Ricinus communis GN=RCOM_1594390 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable lrr receptor-like serine threonine-protein kinase at2g16250

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63076: 16194-21324 , PASA_asmbl_63077: 19570-20018
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000094_010 0.0 - - lrr receptor protein kinase, putative [Ricinus communis]
2 Hb_002529_080 0.0752509418 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase [Jatropha curcas]
3 Hb_003914_050 0.0876151366 - - PREDICTED: uncharacterized protein LOC104445137 [Eucalyptus grandis]
4 Hb_000116_290 0.097824587 - - PREDICTED: proton-coupled amino acid transporter 3 [Jatropha curcas]
5 Hb_008040_060 0.1027238247 - - PREDICTED: potassium transporter 8 [Jatropha curcas]
6 Hb_000976_340 0.1037872762 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
7 Hb_000522_130 0.1087845815 - - PREDICTED: uncharacterized protein LOC105632103 [Jatropha curcas]
8 Hb_000000_070 0.1105565078 - - allene oxide synthase [Hevea brasiliensis]
9 Hb_000808_160 0.1108356198 - - PREDICTED: uncharacterized protein LOC105647443 [Jatropha curcas]
10 Hb_073119_010 0.1112619969 - - hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
11 Hb_000098_250 0.1122640294 - - UDP-glucose flavonoid 3-O-glucosyltransferase [Medicago truncatula]
12 Hb_001248_170 0.1175203869 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
13 Hb_001754_200 0.1182052166 - - PREDICTED: U1 small nuclear ribonucleoprotein C [Jatropha curcas]
14 Hb_000819_010 0.1226729113 - - Receptor-like protein kinase 1, putative [Theobroma cacao]
15 Hb_007237_090 0.1251841379 - - conserved hypothetical protein [Ricinus communis]
16 Hb_008667_030 0.1259708589 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
17 Hb_004122_020 0.1260916328 transcription factor TF Family: ERF ERF/AP2 domain-containing transcription factor [Manihot esculenta]
18 Hb_006615_180 0.1262492934 - - hypothetical protein B456_003G103400 [Gossypium raimondii]
19 Hb_017604_020 0.1273254483 - - hypothetical protein JCGZ_22673 [Jatropha curcas]
20 Hb_012098_180 0.1274886947 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]

Gene co-expression network

sample Hb_000094_010 Hb_000094_010 Hb_002529_080 Hb_002529_080 Hb_000094_010--Hb_002529_080 Hb_003914_050 Hb_003914_050 Hb_000094_010--Hb_003914_050 Hb_000116_290 Hb_000116_290 Hb_000094_010--Hb_000116_290 Hb_008040_060 Hb_008040_060 Hb_000094_010--Hb_008040_060 Hb_000976_340 Hb_000976_340 Hb_000094_010--Hb_000976_340 Hb_000522_130 Hb_000522_130 Hb_000094_010--Hb_000522_130 Hb_008667_030 Hb_008667_030 Hb_002529_080--Hb_008667_030 Hb_000000_070 Hb_000000_070 Hb_002529_080--Hb_000000_070 Hb_002529_080--Hb_008040_060 Hb_000098_250 Hb_000098_250 Hb_002529_080--Hb_000098_250 Hb_002529_080--Hb_003914_050 Hb_003914_050--Hb_008040_060 Hb_003914_050--Hb_008667_030 Hb_012098_180 Hb_012098_180 Hb_003914_050--Hb_012098_180 Hb_000027_060 Hb_000027_060 Hb_003914_050--Hb_000027_060 Hb_000116_290--Hb_000976_340 Hb_000589_330 Hb_000589_330 Hb_000116_290--Hb_000589_330 Hb_050236_010 Hb_050236_010 Hb_000116_290--Hb_050236_010 Hb_001248_170 Hb_001248_170 Hb_000116_290--Hb_001248_170 Hb_004282_040 Hb_004282_040 Hb_000116_290--Hb_004282_040 Hb_008040_060--Hb_001248_170 Hb_008040_060--Hb_000027_060 Hb_008040_060--Hb_000000_070 Hb_008040_060--Hb_008667_030 Hb_000976_340--Hb_001248_170 Hb_005784_020 Hb_005784_020 Hb_000976_340--Hb_005784_020 Hb_000976_340--Hb_008040_060 Hb_002329_030 Hb_002329_030 Hb_000976_340--Hb_002329_030 Hb_033312_090 Hb_033312_090 Hb_000522_130--Hb_033312_090 Hb_000522_130--Hb_012098_180 Hb_001538_050 Hb_001538_050 Hb_000522_130--Hb_001538_050 Hb_000522_130--Hb_003914_050 Hb_000522_130--Hb_008040_060 Hb_000705_130 Hb_000705_130 Hb_000522_130--Hb_000705_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.268885 41.1918 9.29958 14.4998 0.00459142 0.0564036
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.187079 0.507114 0.267181 10.8314 7.90915

CAGE analysis