Hb_000094_050

Information

Type -
Description -
Location Contig94: 26881-27622
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0008253
description 5 -nucleotidase domain-containing protein 4 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000094_050 0.0 - - -
2 Hb_002000_120 0.2022561813 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_093824_010 0.2137483416 - - PREDICTED: uncharacterized protein LOC103326132 [Prunus mume]
4 Hb_003645_050 0.2198196088 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_006916_180 0.2345639162 - - Mitochondrial carnitine/acylcarnitine carrier protein, putative [Ricinus communis]
6 Hb_000959_050 0.2902419592 - - PREDICTED: uncharacterized protein LOC102627366 [Citrus sinensis]
7 Hb_010691_010 0.2973102008 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
8 Hb_005743_030 0.2984504029 - - hypothetical protein, partial [Pseudomonas fluorescens]
9 Hb_001247_260 0.3004479628 - - -
10 Hb_000856_130 0.3045015763 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
11 Hb_142522_040 0.3046672391 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
12 Hb_007044_100 0.3051110486 - - hypothetical protein POPTR_0004s10420g [Populus trichocarpa]
13 Hb_000060_070 0.3077681606 - - hypothetical protein EUTSA_v10023188mg, partial [Eutrema salsugineum]
14 Hb_004864_010 0.3092049001 - - hypothetical protein CICLE_v10003960mg, partial [Citrus clementina]
15 Hb_000173_110 0.3112474356 - - putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus domestica]
16 Hb_001210_100 0.3117190856 - - Gibberellin 20 oxidase, putative [Ricinus communis]
17 Hb_000965_010 0.3119061542 - - hypothetical protein VITISV_016917 [Vitis vinifera]
18 Hb_002154_080 0.3170083961 - - hypothetical protein MIMGU_mgv1a018017mg, partial [Erythranthe guttata]
19 Hb_000495_060 0.318650541 - - Osmotin precursor, putative [Ricinus communis]
20 Hb_000732_180 0.3192787873 - - Uncharacterized protein TCM_030007 [Theobroma cacao]

Gene co-expression network

sample Hb_000094_050 Hb_000094_050 Hb_002000_120 Hb_002000_120 Hb_000094_050--Hb_002000_120 Hb_093824_010 Hb_093824_010 Hb_000094_050--Hb_093824_010 Hb_003645_050 Hb_003645_050 Hb_000094_050--Hb_003645_050 Hb_006916_180 Hb_006916_180 Hb_000094_050--Hb_006916_180 Hb_000959_050 Hb_000959_050 Hb_000094_050--Hb_000959_050 Hb_010691_010 Hb_010691_010 Hb_000094_050--Hb_010691_010 Hb_002000_120--Hb_006916_180 Hb_002000_120--Hb_003645_050 Hb_002000_120--Hb_010691_010 Hb_001210_100 Hb_001210_100 Hb_002000_120--Hb_001210_100 Hb_002217_290 Hb_002217_290 Hb_002000_120--Hb_002217_290 Hb_016734_030 Hb_016734_030 Hb_093824_010--Hb_016734_030 Hb_093824_010--Hb_003645_050 Hb_000495_060 Hb_000495_060 Hb_093824_010--Hb_000495_060 Hb_001871_030 Hb_001871_030 Hb_093824_010--Hb_001871_030 Hb_006717_080 Hb_006717_080 Hb_093824_010--Hb_006717_080 Hb_000060_070 Hb_000060_070 Hb_003645_050--Hb_000060_070 Hb_003645_050--Hb_006916_180 Hb_001355_050 Hb_001355_050 Hb_003645_050--Hb_001355_050 Hb_008642_050 Hb_008642_050 Hb_003645_050--Hb_008642_050 Hb_023547_020 Hb_023547_020 Hb_006916_180--Hb_023547_020 Hb_005436_030 Hb_005436_030 Hb_006916_180--Hb_005436_030 Hb_006916_180--Hb_001210_100 Hb_001534_040 Hb_001534_040 Hb_006916_180--Hb_001534_040 Hb_000060_130 Hb_000060_130 Hb_000959_050--Hb_000060_130 Hb_003527_020 Hb_003527_020 Hb_000959_050--Hb_003527_020 Hb_001247_260 Hb_001247_260 Hb_000959_050--Hb_001247_260 Hb_000636_010 Hb_000636_010 Hb_000959_050--Hb_000636_010 Hb_002154_080 Hb_002154_080 Hb_000959_050--Hb_002154_080 Hb_007543_020 Hb_007543_020 Hb_000959_050--Hb_007543_020 Hb_012239_050 Hb_012239_050 Hb_010691_010--Hb_012239_050 Hb_002475_150 Hb_002475_150 Hb_010691_010--Hb_002475_150 Hb_012132_020 Hb_012132_020 Hb_010691_010--Hb_012132_020 Hb_004864_010 Hb_004864_010 Hb_010691_010--Hb_004864_010 Hb_009615_180 Hb_009615_180 Hb_010691_010--Hb_009615_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.112617 0.104546 0 0.0613916 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.120433 0 0.151452 0.441829

CAGE analysis