Hb_000094_090

Information

Type -
Description -
Location Contig94: 57626-63235
Sequence    

Annotation

kegg
ID pop:POPTR_0014s18320g
description POPTRDRAFT_1100445; hypothetical protein
nr
ID XP_012071845.1
description PREDICTED: DUF21 domain-containing protein At1g47330 isoform X1 [Jatropha curcas]
swissprot
ID Q8RY60
description DUF21 domain-containing protein At1g47330 OS=Arabidopsis thaliana GN=CBSDUF7 PE=1 SV=1
trembl
ID A0A067KQT7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04427 PE=4 SV=1
Gene Ontology
ID GO:0005768
description duf21 domain-containing protein at1g47330

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63083: 57699-63203
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000094_090 0.0 - - PREDICTED: DUF21 domain-containing protein At1g47330 isoform X1 [Jatropha curcas]
2 Hb_000363_120 0.0462273769 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
3 Hb_000809_160 0.0476631252 - - hypothetical protein JCGZ_12355 [Jatropha curcas]
4 Hb_000723_110 0.0625679613 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
5 Hb_000373_230 0.0639647354 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
6 Hb_023226_070 0.0646463978 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004870_050 0.0693136462 - - PREDICTED: ATP-dependent RNA helicase DBP3 [Jatropha curcas]
8 Hb_001545_150 0.0693618713 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105635527 [Jatropha curcas]
9 Hb_000003_400 0.0702792431 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
10 Hb_004899_040 0.0710169044 transcription factor TF Family: ARF Auxin response factor [Medicago truncatula]
11 Hb_002542_130 0.0713473641 transcription factor TF Family: HB Homeobox protein LUMINIDEPENDENS, putative [Ricinus communis]
12 Hb_000069_130 0.0719329311 - - PREDICTED: uncharacterized protein LOC105642829 isoform X1 [Jatropha curcas]
13 Hb_001754_030 0.0728407303 - - PREDICTED: ubiquitin-like-specific protease ESD4 [Jatropha curcas]
14 Hb_000340_030 0.0746005965 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
15 Hb_000866_450 0.0746714512 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
16 Hb_004410_070 0.0750496772 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
17 Hb_012565_050 0.07572754 - - PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa [Jatropha curcas]
18 Hb_001225_030 0.0760781069 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 1 [Jatropha curcas]
19 Hb_060094_020 0.076101865 desease resistance Gene Name: ATP_bind_1 xpa-binding protein, putative [Ricinus communis]
20 Hb_031641_010 0.0776412059 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000094_090 Hb_000094_090 Hb_000363_120 Hb_000363_120 Hb_000094_090--Hb_000363_120 Hb_000809_160 Hb_000809_160 Hb_000094_090--Hb_000809_160 Hb_000723_110 Hb_000723_110 Hb_000094_090--Hb_000723_110 Hb_000373_230 Hb_000373_230 Hb_000094_090--Hb_000373_230 Hb_023226_070 Hb_023226_070 Hb_000094_090--Hb_023226_070 Hb_004870_050 Hb_004870_050 Hb_000094_090--Hb_004870_050 Hb_000363_120--Hb_000809_160 Hb_031641_010 Hb_031641_010 Hb_000363_120--Hb_031641_010 Hb_000340_030 Hb_000340_030 Hb_000363_120--Hb_000340_030 Hb_004899_040 Hb_004899_040 Hb_000363_120--Hb_004899_040 Hb_001545_150 Hb_001545_150 Hb_000363_120--Hb_001545_150 Hb_002477_250 Hb_002477_250 Hb_000809_160--Hb_002477_250 Hb_000809_160--Hb_031641_010 Hb_000866_450 Hb_000866_450 Hb_000809_160--Hb_000866_450 Hb_000120_910 Hb_000120_910 Hb_000809_160--Hb_000120_910 Hb_007017_070 Hb_007017_070 Hb_000723_110--Hb_007017_070 Hb_000926_010 Hb_000926_010 Hb_000723_110--Hb_000926_010 Hb_000723_110--Hb_000809_160 Hb_004410_070 Hb_004410_070 Hb_000723_110--Hb_004410_070 Hb_000723_110--Hb_000373_230 Hb_000915_060 Hb_000915_060 Hb_000373_230--Hb_000915_060 Hb_001410_020 Hb_001410_020 Hb_000373_230--Hb_001410_020 Hb_000373_230--Hb_000363_120 Hb_000373_230--Hb_000809_160 Hb_060094_020 Hb_060094_020 Hb_023226_070--Hb_060094_020 Hb_001754_030 Hb_001754_030 Hb_023226_070--Hb_001754_030 Hb_000445_060 Hb_000445_060 Hb_023226_070--Hb_000445_060 Hb_023226_070--Hb_000723_110 Hb_002811_040 Hb_002811_040 Hb_023226_070--Hb_002811_040 Hb_004870_050--Hb_060094_020 Hb_003927_040 Hb_003927_040 Hb_004870_050--Hb_003927_040 Hb_002110_160 Hb_002110_160 Hb_004870_050--Hb_002110_160 Hb_000282_090 Hb_000282_090 Hb_004870_050--Hb_000282_090 Hb_004648_090 Hb_004648_090 Hb_004870_050--Hb_004648_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.8147 44.6313 27.4739 19.7254 19.1862 14.6587
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.948 16.7106 12.2916 16.9206 17.9117

CAGE analysis