Hb_000094_130

Information

Type -
Description -
Location Contig94: 95074-98259
Sequence    

Annotation

kegg
ID rcu:RCOM_1594180
description transporter, putative
nr
ID XP_012071833.1
description PREDICTED: random slug protein 5 [Jatropha curcas]
swissprot
ID Q55CU8
description Random slug protein 5 OS=Dictyostelium discoideum GN=rsc5 PE=2 SV=1
trembl
ID A0A067KQT3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04422 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63092: 95232-98035
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000094_130 0.0 - - PREDICTED: random slug protein 5 [Jatropha curcas]
2 Hb_005188_090 0.1424419106 - - PREDICTED: phosphatidylinositol 4-kinase gamma 7-like [Jatropha curcas]
3 Hb_000327_220 0.1433109405 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
4 Hb_004410_100 0.1441515016 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 21 [Jatropha curcas]
5 Hb_001277_090 0.1442690766 - - PREDICTED: uncharacterized protein LOC105632061 [Jatropha curcas]
6 Hb_000236_140 0.1474161678 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like [Jatropha curcas]
7 Hb_005043_010 0.1474650159 - - calcium ion binding protein, putative [Ricinus communis]
8 Hb_000172_560 0.1476958804 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750 [Jatropha curcas]
9 Hb_002290_040 0.1522207444 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004785_140 0.1547260712 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X2 [Jatropha curcas]
11 Hb_004429_070 0.1589482478 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
12 Hb_000001_140 0.1629563935 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12 isoform X1 [Jatropha curcas]
13 Hb_002756_020 0.1638709169 transcription factor TF Family: HB bel1 homeotic protein, putative [Ricinus communis]
14 Hb_002498_060 0.1640312497 - - ATP binding protein, putative [Ricinus communis]
15 Hb_001959_160 0.1677124734 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
16 Hb_011360_080 0.1700283321 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
17 Hb_007304_040 0.1701375016 - - PREDICTED: polyadenylate-binding protein 3 [Jatropha curcas]
18 Hb_005686_030 0.1720984959 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial-like [Jatropha curcas]
19 Hb_000479_130 0.174308898 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39350 [Jatropha curcas]
20 Hb_003551_050 0.1750108704 - - PREDICTED: mitochondrial fission 1 protein A [Jatropha curcas]

Gene co-expression network

sample Hb_000094_130 Hb_000094_130 Hb_005188_090 Hb_005188_090 Hb_000094_130--Hb_005188_090 Hb_000327_220 Hb_000327_220 Hb_000094_130--Hb_000327_220 Hb_004410_100 Hb_004410_100 Hb_000094_130--Hb_004410_100 Hb_001277_090 Hb_001277_090 Hb_000094_130--Hb_001277_090 Hb_000236_140 Hb_000236_140 Hb_000094_130--Hb_000236_140 Hb_005043_010 Hb_005043_010 Hb_000094_130--Hb_005043_010 Hb_000172_560 Hb_000172_560 Hb_005188_090--Hb_000172_560 Hb_002603_160 Hb_002603_160 Hb_005188_090--Hb_002603_160 Hb_005188_090--Hb_000236_140 Hb_005188_090--Hb_005043_010 Hb_007416_270 Hb_007416_270 Hb_005188_090--Hb_007416_270 Hb_003687_100 Hb_003687_100 Hb_005188_090--Hb_003687_100 Hb_002756_020 Hb_002756_020 Hb_000327_220--Hb_002756_020 Hb_011030_020 Hb_011030_020 Hb_000327_220--Hb_011030_020 Hb_001159_080 Hb_001159_080 Hb_000327_220--Hb_001159_080 Hb_005224_010 Hb_005224_010 Hb_000327_220--Hb_005224_010 Hb_003551_050 Hb_003551_050 Hb_000327_220--Hb_003551_050 Hb_000789_220 Hb_000789_220 Hb_000327_220--Hb_000789_220 Hb_004410_100--Hb_000236_140 Hb_004128_180 Hb_004128_180 Hb_004410_100--Hb_004128_180 Hb_119600_040 Hb_119600_040 Hb_004410_100--Hb_119600_040 Hb_004414_050 Hb_004414_050 Hb_004410_100--Hb_004414_050 Hb_006647_020 Hb_006647_020 Hb_004410_100--Hb_006647_020 Hb_004410_100--Hb_003551_050 Hb_001277_090--Hb_000327_220 Hb_000141_030 Hb_000141_030 Hb_001277_090--Hb_000141_030 Hb_006153_080 Hb_006153_080 Hb_001277_090--Hb_006153_080 Hb_011360_080 Hb_011360_080 Hb_001277_090--Hb_011360_080 Hb_004785_140 Hb_004785_140 Hb_001277_090--Hb_004785_140 Hb_000236_140--Hb_003687_100 Hb_000236_140--Hb_004128_180 Hb_000236_140--Hb_007416_270 Hb_000479_130 Hb_000479_130 Hb_000236_140--Hb_000479_130 Hb_007075_050 Hb_007075_050 Hb_000236_140--Hb_007075_050 Hb_000236_140--Hb_000172_560 Hb_000563_550 Hb_000563_550 Hb_005043_010--Hb_000563_550 Hb_005043_010--Hb_007416_270 Hb_005043_010--Hb_000236_140 Hb_005043_010--Hb_000172_560 Hb_000705_240 Hb_000705_240 Hb_005043_010--Hb_000705_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
83.3972 39.5003 37.2928 45.1581 107.789 91.589
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
144.407 72.3823 487.51 76.3306 26.6471

CAGE analysis