Hb_000094_280

Information

Type -
Description -
Location Contig94: 211601-215502
Sequence    

Annotation

kegg
ID rcu:RCOM_1593930
description hypothetical protein
nr
ID XP_012071818.1
description PREDICTED: uncharacterized protein LOC105633771 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KQI9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04411 PE=4 SV=1
Gene Ontology
ID GO:0016458
description endoribonuclease dicer -like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63111: 212214-212951
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000094_280 0.0 - - PREDICTED: uncharacterized protein LOC105633771 [Jatropha curcas]
2 Hb_001579_030 0.08937678 - - Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]
3 Hb_001799_030 0.0945662995 - - PREDICTED: ELMO domain-containing protein C-like [Jatropha curcas]
4 Hb_003528_010 0.0968862238 transcription factor TF Family: MYB PREDICTED: myb-related protein 3R-1 [Jatropha curcas]
5 Hb_000300_500 0.0974344954 - - PREDICTED: uncharacterized protein LOC105632604 [Jatropha curcas]
6 Hb_032808_010 0.0978965412 - - PREDICTED: mitochondrial outer membrane protein porin of 34 kDa [Jatropha curcas]
7 Hb_000025_030 0.099867713 - - transcription factor, putative [Ricinus communis]
8 Hb_027380_130 0.0999001271 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 23 isoform X2 [Jatropha curcas]
9 Hb_000185_070 0.1001473832 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003185_010 0.1017244385 - - PREDICTED: V-type proton ATPase subunit c''1 [Jatropha curcas]
11 Hb_002998_060 0.1024948013 - - PREDICTED: vacuolar protein-sorting-associated protein 33 homolog [Jatropha curcas]
12 Hb_005357_080 0.1040069059 - - PREDICTED: tyrosyl-DNA phosphodiesterase 1 [Jatropha curcas]
13 Hb_003994_290 0.1043591783 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic [Jatropha curcas]
14 Hb_001357_350 0.1060822094 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000808_050 0.1062762985 - - exonuclease, putative [Ricinus communis]
16 Hb_002197_020 0.1097458722 - - DNA-directed RNA polymerase family protein [Theobroma cacao]
17 Hb_008511_120 0.1099936455 - - NADH-ubiquinone oxidoreductase 1, chain, putative [Ricinus communis]
18 Hb_027428_010 0.1103514435 - - alpha-1,3-mannosyltransferase, putative [Ricinus communis]
19 Hb_000768_090 0.1105289278 - - PREDICTED: UTP--glucose-1-phosphate uridylyltransferase isoform X1 [Jatropha curcas]
20 Hb_016467_010 0.1107906108 - - hypothetical protein POPTR_0004s18340g [Populus trichocarpa]

Gene co-expression network

sample Hb_000094_280 Hb_000094_280 Hb_001579_030 Hb_001579_030 Hb_000094_280--Hb_001579_030 Hb_001799_030 Hb_001799_030 Hb_000094_280--Hb_001799_030 Hb_003528_010 Hb_003528_010 Hb_000094_280--Hb_003528_010 Hb_000300_500 Hb_000300_500 Hb_000094_280--Hb_000300_500 Hb_032808_010 Hb_032808_010 Hb_000094_280--Hb_032808_010 Hb_000025_030 Hb_000025_030 Hb_000094_280--Hb_000025_030 Hb_000347_540 Hb_000347_540 Hb_001579_030--Hb_000347_540 Hb_025645_010 Hb_025645_010 Hb_001579_030--Hb_025645_010 Hb_001662_070 Hb_001662_070 Hb_001579_030--Hb_001662_070 Hb_000815_320 Hb_000815_320 Hb_001579_030--Hb_000815_320 Hb_000787_050 Hb_000787_050 Hb_001579_030--Hb_000787_050 Hb_000403_060 Hb_000403_060 Hb_001579_030--Hb_000403_060 Hb_002304_150 Hb_002304_150 Hb_001799_030--Hb_002304_150 Hb_000720_040 Hb_000720_040 Hb_001799_030--Hb_000720_040 Hb_012258_010 Hb_012258_010 Hb_001799_030--Hb_012258_010 Hb_001799_030--Hb_000300_500 Hb_000110_310 Hb_000110_310 Hb_001799_030--Hb_000110_310 Hb_002681_100 Hb_002681_100 Hb_001799_030--Hb_002681_100 Hb_032920_060 Hb_032920_060 Hb_003528_010--Hb_032920_060 Hb_000185_070 Hb_000185_070 Hb_003528_010--Hb_000185_070 Hb_003549_150 Hb_003549_150 Hb_003528_010--Hb_003549_150 Hb_010381_090 Hb_010381_090 Hb_003528_010--Hb_010381_090 Hb_006588_200 Hb_006588_200 Hb_003528_010--Hb_006588_200 Hb_000205_300 Hb_000205_300 Hb_003528_010--Hb_000205_300 Hb_006455_120 Hb_006455_120 Hb_000300_500--Hb_006455_120 Hb_000300_500--Hb_000720_040 Hb_000637_110 Hb_000637_110 Hb_000300_500--Hb_000637_110 Hb_002754_010 Hb_002754_010 Hb_000300_500--Hb_002754_010 Hb_001159_130 Hb_001159_130 Hb_000300_500--Hb_001159_130 Hb_000603_150 Hb_000603_150 Hb_000300_500--Hb_000603_150 Hb_005730_120 Hb_005730_120 Hb_032808_010--Hb_005730_120 Hb_005271_220 Hb_005271_220 Hb_032808_010--Hb_005271_220 Hb_008511_120 Hb_008511_120 Hb_032808_010--Hb_008511_120 Hb_002303_070 Hb_002303_070 Hb_032808_010--Hb_002303_070 Hb_003994_290 Hb_003994_290 Hb_032808_010--Hb_003994_290 Hb_003376_330 Hb_003376_330 Hb_032808_010--Hb_003376_330 Hb_000019_150 Hb_000019_150 Hb_000025_030--Hb_000019_150 Hb_000808_050 Hb_000808_050 Hb_000025_030--Hb_000808_050 Hb_001143_190 Hb_001143_190 Hb_000025_030--Hb_001143_190 Hb_001450_050 Hb_001450_050 Hb_000025_030--Hb_001450_050 Hb_007416_330 Hb_007416_330 Hb_000025_030--Hb_007416_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.32967 0.455165 1.12255 1.0973 0.732078 0.757431
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.85977 0.988809 1.16718 0.857281 0.360006

CAGE analysis