Hb_000094_300

Information

Type -
Description -
Location Contig94: 221833-236117
Sequence    

Annotation

kegg
ID pop:POPTR_0002s26360g
description hypothetical protein
nr
ID XP_006386929.1
description hypothetical protein POPTR_0002s26360g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GQQ5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s26360g PE=4 SV=1
Gene Ontology
ID GO:0016458
description dentin sialophosphoprotein isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63113: 223409-235215 , PASA_asmbl_63114: 235217-236103
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000094_300 0.0 - - hypothetical protein POPTR_0002s26360g [Populus trichocarpa]
2 Hb_000212_330 0.0660590173 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_008511_130 0.0685896493 - - PREDICTED: probable phenylalanine--tRNA ligase alpha subunit [Jatropha curcas]
4 Hb_009545_080 0.0813403981 - - hypothetical protein POPTR_0008s15400g [Populus trichocarpa]
5 Hb_000053_130 0.0816132729 - - PREDICTED: uncharacterized protein At1g26090, chloroplastic [Jatropha curcas]
6 Hb_000521_080 0.0848140417 - - Zinc finger BED domain-containing 4 [Gossypium arboreum]
7 Hb_000141_250 0.0849367325 - - PREDICTED: oxysterol-binding protein-related protein 2A isoform X3 [Jatropha curcas]
8 Hb_001124_160 0.089085643 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
9 Hb_000390_170 0.0909328141 - - PREDICTED: V-type proton ATPase subunit H [Jatropha curcas]
10 Hb_004055_030 0.091206315 - - casein kinase, putative [Ricinus communis]
11 Hb_008748_040 0.0928327374 - - beta-hydroxyacyl-acyl carrier protein dehydratase [Hevea brasiliensis]
12 Hb_002728_070 0.0937096423 - - PREDICTED: quinone oxidoreductase-like protein 2 homolog [Jatropha curcas]
13 Hb_032986_010 0.0944773487 - - Nicotinate-nucleotide pyrophosphorylase [carboxylating], putative [Ricinus communis]
14 Hb_002997_080 0.0976051331 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
15 Hb_002016_170 0.0978446379 - - DNA binding protein, putative [Ricinus communis]
16 Hb_000230_560 0.0987755473 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
17 Hb_000390_180 0.0988478362 - - PREDICTED: uncharacterized protein LOC101291673 [Fragaria vesca subsp. vesca]
18 Hb_000025_470 0.1007240364 - - PREDICTED: signal peptide peptidase [Jatropha curcas]
19 Hb_003813_130 0.1013232973 - - PREDICTED: plastidic glucose transporter 4 [Jatropha curcas]
20 Hb_011930_160 0.1014856445 - - PREDICTED: tetratricopeptide repeat protein 38-like [Jatropha curcas]

Gene co-expression network

sample Hb_000094_300 Hb_000094_300 Hb_000212_330 Hb_000212_330 Hb_000094_300--Hb_000212_330 Hb_008511_130 Hb_008511_130 Hb_000094_300--Hb_008511_130 Hb_009545_080 Hb_009545_080 Hb_000094_300--Hb_009545_080 Hb_000053_130 Hb_000053_130 Hb_000094_300--Hb_000053_130 Hb_000521_080 Hb_000521_080 Hb_000094_300--Hb_000521_080 Hb_000141_250 Hb_000141_250 Hb_000094_300--Hb_000141_250 Hb_000212_330--Hb_009545_080 Hb_008748_040 Hb_008748_040 Hb_000212_330--Hb_008748_040 Hb_000212_330--Hb_008511_130 Hb_054865_120 Hb_054865_120 Hb_000212_330--Hb_054865_120 Hb_000883_020 Hb_000883_020 Hb_000212_330--Hb_000883_020 Hb_008511_130--Hb_000141_250 Hb_002997_080 Hb_002997_080 Hb_008511_130--Hb_002997_080 Hb_000230_560 Hb_000230_560 Hb_008511_130--Hb_000230_560 Hb_000390_170 Hb_000390_170 Hb_008511_130--Hb_000390_170 Hb_000618_040 Hb_000618_040 Hb_008511_130--Hb_000618_040 Hb_009545_080--Hb_000883_020 Hb_009545_080--Hb_002997_080 Hb_009545_080--Hb_000230_560 Hb_004109_280 Hb_004109_280 Hb_009545_080--Hb_004109_280 Hb_032986_010 Hb_032986_010 Hb_009545_080--Hb_032986_010 Hb_150360_030 Hb_150360_030 Hb_000053_130--Hb_150360_030 Hb_000076_120 Hb_000076_120 Hb_000053_130--Hb_000076_120 Hb_000058_100 Hb_000058_100 Hb_000053_130--Hb_000058_100 Hb_000053_130--Hb_054865_120 Hb_000299_040 Hb_000299_040 Hb_000053_130--Hb_000299_040 Hb_002141_030 Hb_002141_030 Hb_000521_080--Hb_002141_030 Hb_062135_030 Hb_062135_030 Hb_000521_080--Hb_062135_030 Hb_000521_080--Hb_000212_330 Hb_005054_230 Hb_005054_230 Hb_000521_080--Hb_005054_230 Hb_002728_070 Hb_002728_070 Hb_000521_080--Hb_002728_070 Hb_000141_250--Hb_000230_560 Hb_005288_150 Hb_005288_150 Hb_000141_250--Hb_005288_150 Hb_000141_250--Hb_002997_080 Hb_000141_250--Hb_000390_170 Hb_002197_020 Hb_002197_020 Hb_000141_250--Hb_002197_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.52964 1.38244 3.11772 2.19929 2.94442 3.11008
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.89482 1.74245 2.72535 2.20501 1.8123

CAGE analysis