Hb_000094_330

Information

Type -
Description -
Location Contig94: 254909-269356
Sequence    

Annotation

kegg
ID rcu:RCOM_1593880
description cop9 complex subunit, putative
nr
ID XP_012071811.1
description PREDICTED: COP9 signalosome complex subunit 4 [Jatropha curcas]
swissprot
ID Q8L5U0
description COP9 signalosome complex subunit 4 OS=Arabidopsis thaliana GN=CSN4 PE=1 SV=2
trembl
ID A0A067KQI5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04406 PE=4 SV=1
Gene Ontology
ID GO:0000502
description cop9 signalosome complex subunit 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63122: 255141-269153 , PASA_asmbl_63124: 256449-256575 , PASA_asmbl_63125: 256661-256802
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000094_330 0.0 - - PREDICTED: COP9 signalosome complex subunit 4 [Jatropha curcas]
2 Hb_002876_240 0.0601554807 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [Jatropha curcas]
3 Hb_006570_140 0.0858302271 - - PREDICTED: neurofilament heavy polypeptide-like [Jatropha curcas]
4 Hb_002820_050 0.0861597472 - - PREDICTED: putative glutathione-specific gamma-glutamylcyclotransferase 2 [Jatropha curcas]
5 Hb_001922_170 0.0871666213 - - Plastidic pyruvate kinase beta subunit 1 isoform 2 [Theobroma cacao]
6 Hb_146673_010 0.0915471003 - - PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
7 Hb_002820_110 0.09702844 - - PREDICTED: uncharacterized protein LOC105638918 [Jatropha curcas]
8 Hb_001221_320 0.1001125752 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 [Jatropha curcas]
9 Hb_010222_020 0.1023767498 - - PREDICTED: uncharacterized protein LOC105647642 [Jatropha curcas]
10 Hb_001579_270 0.1062844236 - - PREDICTED: phosphatidylinositol 3-kinase, root isoform isoform X1 [Jatropha curcas]
11 Hb_000529_030 0.1064563434 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_002477_300 0.1080529741 - - transcription factor, putative [Ricinus communis]
13 Hb_004453_130 0.1081127657 - - PREDICTED: tRNA (cytosine-5-)-methyltransferase isoform X1 [Jatropha curcas]
14 Hb_000731_160 0.1083218176 - - PREDICTED: adenosine deaminase-like protein [Jatropha curcas]
15 Hb_054865_120 0.1094795728 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 9 [Jatropha curcas]
16 Hb_010106_010 0.1100614928 - - PREDICTED: cucumisin-like [Populus euphratica]
17 Hb_001814_070 0.1103757659 - - PREDICTED: uncharacterized protein LOC105650638 [Jatropha curcas]
18 Hb_004096_090 0.1109131929 - - Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative [Ricinus communis]
19 Hb_001157_020 0.1111989056 - - PREDICTED: uncharacterized protein LOC105649844 isoform X1 [Jatropha curcas]
20 Hb_001662_150 0.1113032783 - - Scaffold attachment factor B1 [Medicago truncatula]

Gene co-expression network

sample Hb_000094_330 Hb_000094_330 Hb_002876_240 Hb_002876_240 Hb_000094_330--Hb_002876_240 Hb_006570_140 Hb_006570_140 Hb_000094_330--Hb_006570_140 Hb_002820_050 Hb_002820_050 Hb_000094_330--Hb_002820_050 Hb_001922_170 Hb_001922_170 Hb_000094_330--Hb_001922_170 Hb_146673_010 Hb_146673_010 Hb_000094_330--Hb_146673_010 Hb_002820_110 Hb_002820_110 Hb_000094_330--Hb_002820_110 Hb_002876_240--Hb_002820_110 Hb_002876_240--Hb_002820_050 Hb_004453_130 Hb_004453_130 Hb_002876_240--Hb_004453_130 Hb_002876_240--Hb_146673_010 Hb_000529_030 Hb_000529_030 Hb_002876_240--Hb_000529_030 Hb_006570_140--Hb_001922_170 Hb_000035_500 Hb_000035_500 Hb_006570_140--Hb_000035_500 Hb_005847_060 Hb_005847_060 Hb_006570_140--Hb_005847_060 Hb_001662_150 Hb_001662_150 Hb_006570_140--Hb_001662_150 Hb_000731_160 Hb_000731_160 Hb_006570_140--Hb_000731_160 Hb_002820_050--Hb_004453_130 Hb_005730_120 Hb_005730_120 Hb_002820_050--Hb_005730_120 Hb_022132_050 Hb_022132_050 Hb_002820_050--Hb_022132_050 Hb_007885_060 Hb_007885_060 Hb_002820_050--Hb_007885_060 Hb_002601_110 Hb_002601_110 Hb_002820_050--Hb_002601_110 Hb_054865_120 Hb_054865_120 Hb_001922_170--Hb_054865_120 Hb_001922_170--Hb_005847_060 Hb_001579_270 Hb_001579_270 Hb_001922_170--Hb_001579_270 Hb_001922_170--Hb_002820_050 Hb_000633_020 Hb_000633_020 Hb_146673_010--Hb_000633_020 Hb_002477_300 Hb_002477_300 Hb_146673_010--Hb_002477_300 Hb_000465_090 Hb_000465_090 Hb_146673_010--Hb_000465_090 Hb_002946_190 Hb_002946_190 Hb_146673_010--Hb_002946_190 Hb_003077_020 Hb_003077_020 Hb_146673_010--Hb_003077_020 Hb_146673_010--Hb_000731_160 Hb_000510_330 Hb_000510_330 Hb_002820_110--Hb_000510_330 Hb_017002_020 Hb_017002_020 Hb_002820_110--Hb_017002_020 Hb_000000_360 Hb_000000_360 Hb_002820_110--Hb_000000_360 Hb_008686_080 Hb_008686_080 Hb_002820_110--Hb_008686_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.2162 4.49996 15.0288 8.20487 7.33229 14.446
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.9275 17.9401 5.53526 7.57899 8.31408

CAGE analysis