Hb_000094_390

Information

Type -
Description -
Location Contig94: 363183-364728
Sequence    

Annotation

kegg
ID vvi:100853715
description acyl-[acyl-carrier-protein] desaturase, chloroplastic-like
nr
ID XP_010245693.1
description PREDICTED: acyl-[acyl-carrier-protein] desaturase, chloroplastic-like [Nelumbo nucifera]
swissprot
ID P22337
description Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Ricinus communis PE=1 SV=1
trembl
ID C0KWD3
description Stearoyl-acyl-carrier protein desaturase OS=Ricinus communis GN=SAD4 PE=2 SV=1
Gene Ontology
ID GO:0009507
description acyl-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 002_O01.ab1: 363873-364874 , 008_C19.ab1: 364099-364873

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000094_390 0.0 - - PREDICTED: acyl-[acyl-carrier-protein] desaturase, chloroplastic-like [Nelumbo nucifera]
2 Hb_001178_120 0.1286328364 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
3 Hb_000153_020 0.1372816183 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001892_160 0.1597633382 - - PREDICTED: MLP-like protein 28-like [Citrus sinensis]
5 Hb_158990_010 0.1616642301 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
6 Hb_005539_320 0.1758028265 - - PREDICTED: pumilio homolog 15-like [Vitis vinifera]
7 Hb_177627_010 0.1790976619 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
8 Hb_132629_010 0.1792137403 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
9 Hb_000153_040 0.1854853437 - - -
10 Hb_000028_630 0.1923654289 - - PIN-like protein, partial [Selaginella apoda]
11 Hb_011639_070 0.1928924525 - - PREDICTED: uncharacterized protein LOC105636024 isoform X2 [Jatropha curcas]
12 Hb_000007_310 0.1954342989 - - hypothetical protein POPTR_0010s14370g [Populus trichocarpa]
13 Hb_007634_020 0.1956399274 - - -
14 Hb_001604_110 0.2051208628 - - -
15 Hb_003494_260 0.2065335378 - - -
16 Hb_075570_010 0.212547085 - - -
17 Hb_001691_050 0.2149714347 - - -
18 Hb_002234_220 0.220406367 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1 [Jatropha curcas]
19 Hb_156144_020 0.2295721675 - - PREDICTED: uncharacterized protein At5g65660 [Vitis vinifera]
20 Hb_000345_480 0.2308352912 - - cyclin-dependent protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000094_390 Hb_000094_390 Hb_001178_120 Hb_001178_120 Hb_000094_390--Hb_001178_120 Hb_000153_020 Hb_000153_020 Hb_000094_390--Hb_000153_020 Hb_001892_160 Hb_001892_160 Hb_000094_390--Hb_001892_160 Hb_158990_010 Hb_158990_010 Hb_000094_390--Hb_158990_010 Hb_005539_320 Hb_005539_320 Hb_000094_390--Hb_005539_320 Hb_177627_010 Hb_177627_010 Hb_000094_390--Hb_177627_010 Hb_001178_120--Hb_158990_010 Hb_001178_120--Hb_000153_020 Hb_001178_120--Hb_005539_320 Hb_001178_120--Hb_177627_010 Hb_132629_010 Hb_132629_010 Hb_001178_120--Hb_132629_010 Hb_000153_020--Hb_177627_010 Hb_000153_020--Hb_132629_010 Hb_000007_310 Hb_000007_310 Hb_000153_020--Hb_000007_310 Hb_000153_020--Hb_005539_320 Hb_075570_010 Hb_075570_010 Hb_000153_020--Hb_075570_010 Hb_156144_020 Hb_156144_020 Hb_001892_160--Hb_156144_020 Hb_171554_020 Hb_171554_020 Hb_001892_160--Hb_171554_020 Hb_001892_160--Hb_000007_310 Hb_001892_160--Hb_132629_010 Hb_001892_160--Hb_000153_020 Hb_001892_160--Hb_177627_010 Hb_158990_010--Hb_000153_020 Hb_000153_040 Hb_000153_040 Hb_158990_010--Hb_000153_040 Hb_000395_100 Hb_000395_100 Hb_158990_010--Hb_000395_100 Hb_009693_040 Hb_009693_040 Hb_158990_010--Hb_009693_040 Hb_001604_110 Hb_001604_110 Hb_005539_320--Hb_001604_110 Hb_005539_320--Hb_177627_010 Hb_005539_320--Hb_132629_010 Hb_005539_320--Hb_000007_310 Hb_177627_010--Hb_132629_010 Hb_177627_010--Hb_001604_110 Hb_177627_010--Hb_000007_310 Hb_177627_010--Hb_075570_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1094.65 3.73424 1.5217 2.26221 560.179 353.874
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.619678 0.129985 43.612 2.9298 4.3005

CAGE analysis