Hb_000096_010

Information

Type -
Description -
Location Contig96: 8837-10174
Sequence    

Annotation

kegg
ID cit:102629988
description U-box domain-containing protein 30-like
nr
ID XP_006466465.1
description PREDICTED: U-box domain-containing protein 30-like [Citrus sinensis]
swissprot
ID Q058P4
description U-box domain-containing protein 30 OS=Arabidopsis thaliana GN=PUB30 PE=2 SV=1
trembl
ID V4UJ09
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025589mg PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 30

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63683: 8641-9535 , PASA_asmbl_63685: 10442-10847
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000096_010 0.0 - - PREDICTED: U-box domain-containing protein 30-like [Citrus sinensis]
2 Hb_000538_070 0.0703269378 - - PREDICTED: coatomer subunit delta [Jatropha curcas]
3 Hb_000749_220 0.0813686444 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
4 Hb_000130_050 0.0859450434 - - 14-3-3 protein, putative [Ricinus communis]
5 Hb_003177_030 0.086180307 - - PREDICTED: uncharacterized protein LOC105635357 [Jatropha curcas]
6 Hb_002809_050 0.0913993255 - - PREDICTED: protein FIZZY-RELATED 2 [Jatropha curcas]
7 Hb_002998_060 0.0917447704 - - PREDICTED: vacuolar protein-sorting-associated protein 33 homolog [Jatropha curcas]
8 Hb_001159_130 0.0920862512 - - PREDICTED: protein cornichon homolog 4 [Jatropha curcas]
9 Hb_000928_020 0.0924141034 - - hypothetical protein CICLE_v10013682mg [Citrus clementina]
10 Hb_000138_110 0.0924700314 - - PREDICTED: probable protein phosphatase 2C 68 [Jatropha curcas]
11 Hb_155159_020 0.0937668526 - - PREDICTED: clathrin light chain 1-like [Jatropha curcas]
12 Hb_001799_210 0.0939031263 - - PREDICTED: COP9 signalosome complex subunit 7 isoform X1 [Jatropha curcas]
13 Hb_084646_010 0.0953535014 - - hypothetical protein CICLE_v10031746mg [Citrus clementina]
14 Hb_003470_090 0.0955989169 - - PREDICTED: pumilio homolog 12 [Jatropha curcas]
15 Hb_007460_020 0.0957806185 - - PREDICTED: guanosine nucleotide diphosphate dissociation inhibitor 1 [Jatropha curcas]
16 Hb_000787_020 0.0984284064 - - PREDICTED: glucose-6-phosphate/phosphate translocator 1, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_000465_160 0.1007754998 - - PREDICTED: uncharacterized protein LOC105632297 [Jatropha curcas]
18 Hb_027380_130 0.1007923959 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 23 isoform X2 [Jatropha curcas]
19 Hb_001014_040 0.1009080249 - - PREDICTED: uncharacterized protein LOC105647308 [Jatropha curcas]
20 Hb_000092_010 0.1015032313 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646502 [Jatropha curcas]

Gene co-expression network

sample Hb_000096_010 Hb_000096_010 Hb_000538_070 Hb_000538_070 Hb_000096_010--Hb_000538_070 Hb_000749_220 Hb_000749_220 Hb_000096_010--Hb_000749_220 Hb_000130_050 Hb_000130_050 Hb_000096_010--Hb_000130_050 Hb_003177_030 Hb_003177_030 Hb_000096_010--Hb_003177_030 Hb_002809_050 Hb_002809_050 Hb_000096_010--Hb_002809_050 Hb_002998_060 Hb_002998_060 Hb_000096_010--Hb_002998_060 Hb_119600_070 Hb_119600_070 Hb_000538_070--Hb_119600_070 Hb_001390_130 Hb_001390_130 Hb_000538_070--Hb_001390_130 Hb_000291_080 Hb_000291_080 Hb_000538_070--Hb_000291_080 Hb_009339_030 Hb_009339_030 Hb_000538_070--Hb_009339_030 Hb_003540_030 Hb_003540_030 Hb_000538_070--Hb_003540_030 Hb_000749_220--Hb_003177_030 Hb_000172_290 Hb_000172_290 Hb_000749_220--Hb_000172_290 Hb_000477_060 Hb_000477_060 Hb_000749_220--Hb_000477_060 Hb_000003_250 Hb_000003_250 Hb_000749_220--Hb_000003_250 Hb_005490_030 Hb_005490_030 Hb_000749_220--Hb_005490_030 Hb_001159_130 Hb_001159_130 Hb_000749_220--Hb_001159_130 Hb_001014_040 Hb_001014_040 Hb_000130_050--Hb_001014_040 Hb_000108_070 Hb_000108_070 Hb_000130_050--Hb_000108_070 Hb_000130_050--Hb_000538_070 Hb_004079_030 Hb_004079_030 Hb_000130_050--Hb_004079_030 Hb_000161_060 Hb_000161_060 Hb_000130_050--Hb_000161_060 Hb_001009_270 Hb_001009_270 Hb_003177_030--Hb_001009_270 Hb_005144_160 Hb_005144_160 Hb_003177_030--Hb_005144_160 Hb_000676_250 Hb_000676_250 Hb_003177_030--Hb_000676_250 Hb_003177_030--Hb_001159_130 Hb_000019_030 Hb_000019_030 Hb_003177_030--Hb_000019_030 Hb_022115_020 Hb_022115_020 Hb_002809_050--Hb_022115_020 Hb_000260_010 Hb_000260_010 Hb_002809_050--Hb_000260_010 Hb_000213_010 Hb_000213_010 Hb_002809_050--Hb_000213_010 Hb_006634_070 Hb_006634_070 Hb_002809_050--Hb_006634_070 Hb_002809_050--Hb_003177_030 Hb_006938_080 Hb_006938_080 Hb_002809_050--Hb_006938_080 Hb_000046_320 Hb_000046_320 Hb_002998_060--Hb_000046_320 Hb_000656_040 Hb_000656_040 Hb_002998_060--Hb_000656_040 Hb_002998_060--Hb_003177_030 Hb_000050_200 Hb_000050_200 Hb_002998_060--Hb_000050_200 Hb_002998_060--Hb_000019_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.47628 2.71188 4.49788 7.77657 4.56314 5.2832
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.13551 5.91968 12.6434 6.23697 3.44512

CAGE analysis