Hb_000096_060

Information

Type -
Description -
Location Contig96: 60631-61181
Sequence    

Annotation

kegg
ID rcu:RCOM_0581310
description hypothetical protein
nr
ID XP_002525292.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SH23
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0581310 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000096_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_011310_060 0.1371892586 - - PREDICTED: uncharacterized protein At2g34160-like [Jatropha curcas]
3 Hb_003549_020 0.1549916663 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000645_190 0.1549938455 - - PREDICTED: 60S ribosomal protein L29-1-like [Glycine max]
5 Hb_000364_210 0.1632227569 - - Mitochondrial import receptor subunit TOM7-1, putative [Ricinus communis]
6 Hb_000184_220 0.1668770546 - - hypothetical protein CISIN_1g0207781mg [Citrus sinensis]
7 Hb_001769_100 0.1684183803 - - hypothetical protein POPTR_0014s01620g [Populus trichocarpa]
8 Hb_000449_040 0.1693359966 - - protein with unknown function [Ricinus communis]
9 Hb_010810_020 0.1709477849 - - PREDICTED: uncharacterized protein LOC105638766 [Jatropha curcas]
10 Hb_000487_320 0.1722372038 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]
11 Hb_000134_020 0.1722593378 - - thioredoxin-like family protein [Hevea brasiliensis]
12 Hb_171900_050 0.172462201 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000199_070 0.1740242937 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003623_050 0.1754599872 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001950_120 0.1766614614 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
16 Hb_089839_020 0.1783295354 - - hypothetical protein POPTR_0017s14180g [Populus trichocarpa]
17 Hb_034585_040 0.1788775757 - - PREDICTED: nuclear pore complex protein NUP58 [Jatropha curcas]
18 Hb_005224_050 0.1789911712 - - PREDICTED: uncharacterized protein LOC105632350 [Jatropha curcas]
19 Hb_007497_030 0.179343606 - - mutt domain protein, putative [Ricinus communis]
20 Hb_000236_460 0.1802409983 - - PREDICTED: uncharacterized protein LOC105633119 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000096_060 Hb_000096_060 Hb_011310_060 Hb_011310_060 Hb_000096_060--Hb_011310_060 Hb_003549_020 Hb_003549_020 Hb_000096_060--Hb_003549_020 Hb_000645_190 Hb_000645_190 Hb_000096_060--Hb_000645_190 Hb_000364_210 Hb_000364_210 Hb_000096_060--Hb_000364_210 Hb_000184_220 Hb_000184_220 Hb_000096_060--Hb_000184_220 Hb_001769_100 Hb_001769_100 Hb_000096_060--Hb_001769_100 Hb_002293_030 Hb_002293_030 Hb_011310_060--Hb_002293_030 Hb_000134_020 Hb_000134_020 Hb_011310_060--Hb_000134_020 Hb_002234_210 Hb_002234_210 Hb_011310_060--Hb_002234_210 Hb_171900_050 Hb_171900_050 Hb_011310_060--Hb_171900_050 Hb_009252_130 Hb_009252_130 Hb_011310_060--Hb_009252_130 Hb_000190_060 Hb_000190_060 Hb_011310_060--Hb_000190_060 Hb_000236_460 Hb_000236_460 Hb_003549_020--Hb_000236_460 Hb_003549_020--Hb_000645_190 Hb_097007_010 Hb_097007_010 Hb_003549_020--Hb_097007_010 Hb_002320_060 Hb_002320_060 Hb_003549_020--Hb_002320_060 Hb_004007_180 Hb_004007_180 Hb_003549_020--Hb_004007_180 Hb_007497_030 Hb_007497_030 Hb_003549_020--Hb_007497_030 Hb_000645_190--Hb_001769_100 Hb_000085_330 Hb_000085_330 Hb_000645_190--Hb_000085_330 Hb_000645_190--Hb_000134_020 Hb_000645_190--Hb_000236_460 Hb_003058_220 Hb_003058_220 Hb_000645_190--Hb_003058_220 Hb_001862_100 Hb_001862_100 Hb_000364_210--Hb_001862_100 Hb_002719_080 Hb_002719_080 Hb_000364_210--Hb_002719_080 Hb_000648_020 Hb_000648_020 Hb_000364_210--Hb_000648_020 Hb_003938_180 Hb_003938_180 Hb_000364_210--Hb_003938_180 Hb_002539_090 Hb_002539_090 Hb_000364_210--Hb_002539_090 Hb_003929_120 Hb_003929_120 Hb_000364_210--Hb_003929_120 Hb_002045_230 Hb_002045_230 Hb_000184_220--Hb_002045_230 Hb_000352_140 Hb_000352_140 Hb_000184_220--Hb_000352_140 Hb_021409_090 Hb_021409_090 Hb_000184_220--Hb_021409_090 Hb_000184_220--Hb_000364_210 Hb_005841_050 Hb_005841_050 Hb_000184_220--Hb_005841_050 Hb_000123_160 Hb_000123_160 Hb_000184_220--Hb_000123_160 Hb_000419_130 Hb_000419_130 Hb_001769_100--Hb_000419_130 Hb_012265_010 Hb_012265_010 Hb_001769_100--Hb_012265_010 Hb_003623_050 Hb_003623_050 Hb_001769_100--Hb_003623_050 Hb_011161_050 Hb_011161_050 Hb_001769_100--Hb_011161_050 Hb_001950_120 Hb_001950_120 Hb_001769_100--Hb_001950_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.753969 0.103168 0.095722 0.302399 1.29092 2.85767
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.11018 6.8518 1.48882 0.921383 0.82105

CAGE analysis