Hb_000096_070

Information

Type -
Description -
Location Contig96: 63186-68783
Sequence    

Annotation

kegg
ID pop:POPTR_0016s10950g
description POPTRDRAFT_1103930; DNA helicase family protein
nr
ID XP_012079431.1
description PREDICTED: ruvB-like 2 [Jatropha curcas]
swissprot
ID Q9DE27
description RuvB-like 2 OS=Xenopus laevis GN=ruvbl2 PE=2 SV=1
trembl
ID A0A067K7J0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12553 PE=4 SV=1
Gene Ontology
ID GO:0005524
description ruvb-like 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63686: 63194-66663
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000096_070 0.0 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
2 Hb_000016_250 0.0536888108 - - unnamed protein product [Malassezia sympodialis ATCC 42132]
3 Hb_000034_100 0.0641328937 - - dnajc14 protein, putative [Ricinus communis]
4 Hb_002518_280 0.0641496921 - - phosphate transporter [Manihot esculenta]
5 Hb_003058_190 0.0644582814 - - PREDICTED: uncharacterized protein LOC105628951 isoform X1 [Jatropha curcas]
6 Hb_000563_320 0.0658329127 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
7 Hb_002248_080 0.0661881954 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 25 isoform X2 [Jatropha curcas]
8 Hb_000038_170 0.0665844864 - - PREDICTED: SCY1-like protein 2 [Jatropha curcas]
9 Hb_031527_040 0.0681058087 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
10 Hb_002603_120 0.0699624639 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
11 Hb_000538_270 0.0711896437 - - PREDICTED: serine/threonine-protein kinase HT1-like [Citrus sinensis]
12 Hb_005694_110 0.0715536662 - - hypothetical protein PRUPE_ppa008137mg [Prunus persica]
13 Hb_007254_070 0.0720734351 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X1 [Jatropha curcas]
14 Hb_001157_040 0.0728988754 - - casein kinase, putative [Ricinus communis]
15 Hb_000853_420 0.0731799246 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]
16 Hb_167498_010 0.0737739394 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
17 Hb_003158_010 0.0746166882 - - hypothetical protein JCGZ_17361 [Jatropha curcas]
18 Hb_001242_060 0.0747202047 - - PREDICTED: uncharacterized protein LOC105139508 [Populus euphratica]
19 Hb_001552_020 0.0750753778 - - PREDICTED: uncharacterized protein LOC105639653 [Jatropha curcas]
20 Hb_005779_060 0.0750883985 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000096_070 Hb_000096_070 Hb_000016_250 Hb_000016_250 Hb_000096_070--Hb_000016_250 Hb_000034_100 Hb_000034_100 Hb_000096_070--Hb_000034_100 Hb_002518_280 Hb_002518_280 Hb_000096_070--Hb_002518_280 Hb_003058_190 Hb_003058_190 Hb_000096_070--Hb_003058_190 Hb_000563_320 Hb_000563_320 Hb_000096_070--Hb_000563_320 Hb_002248_080 Hb_002248_080 Hb_000096_070--Hb_002248_080 Hb_000016_250--Hb_000563_320 Hb_005779_060 Hb_005779_060 Hb_000016_250--Hb_005779_060 Hb_001157_040 Hb_001157_040 Hb_000016_250--Hb_001157_040 Hb_001242_060 Hb_001242_060 Hb_000016_250--Hb_001242_060 Hb_031527_040 Hb_031527_040 Hb_000016_250--Hb_031527_040 Hb_005276_210 Hb_005276_210 Hb_000034_100--Hb_005276_210 Hb_000487_110 Hb_000487_110 Hb_000034_100--Hb_000487_110 Hb_005694_110 Hb_005694_110 Hb_000034_100--Hb_005694_110 Hb_054865_100 Hb_054865_100 Hb_000034_100--Hb_054865_100 Hb_005245_130 Hb_005245_130 Hb_000034_100--Hb_005245_130 Hb_000038_170 Hb_000038_170 Hb_002518_280--Hb_000038_170 Hb_023386_020 Hb_023386_020 Hb_002518_280--Hb_023386_020 Hb_010618_010 Hb_010618_010 Hb_002518_280--Hb_010618_010 Hb_000152_380 Hb_000152_380 Hb_002518_280--Hb_000152_380 Hb_000879_200 Hb_000879_200 Hb_002518_280--Hb_000879_200 Hb_004310_150 Hb_004310_150 Hb_002518_280--Hb_004310_150 Hb_003058_190--Hb_000016_250 Hb_011671_430 Hb_011671_430 Hb_003058_190--Hb_011671_430 Hb_000030_300 Hb_000030_300 Hb_003058_190--Hb_000030_300 Hb_003058_190--Hb_031527_040 Hb_000061_460 Hb_000061_460 Hb_003058_190--Hb_000061_460 Hb_000563_320--Hb_001157_040 Hb_000563_320--Hb_031527_040 Hb_000563_320--Hb_005779_060 Hb_000563_320--Hb_001242_060 Hb_011995_010 Hb_011995_010 Hb_000563_320--Hb_011995_010 Hb_112798_020 Hb_112798_020 Hb_002248_080--Hb_112798_020 Hb_002248_080--Hb_000152_380 Hb_002248_080--Hb_004310_150 Hb_000780_230 Hb_000780_230 Hb_002248_080--Hb_000780_230 Hb_002248_080--Hb_031527_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.3115 21.7838 14.3074 10.0323 26.5917 21.0129
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.0032 26.8497 21.9034 16.4681 12.6527

CAGE analysis